Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,307,155 – 2,307,271 |
Length | 116 |
Max. P | 0.783997 |
Location | 2,307,155 – 2,307,271 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 83.94 |
Mean single sequence MFE | -36.95 |
Consensus MFE | -26.33 |
Energy contribution | -29.39 |
Covariance contribution | 3.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.61 |
Structure conservation index | 0.71 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.622616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2307155 116 + 20766785 GCGGUUAGGGGCGGGCCGGUAUGAGGCGGAGGCACGCCCCAUUCGGAUAACACCAAUGAAAUAUAAGGCCACUCUGCAAUAAUAGAGUGUGCCGCACAACUGAGCAGUCGGUGGGG .(((...((((((.(((.((.....))...))).))))))..))).....((((............((((((((((......))))))).)))((........))....))))... ( -43.80) >DroSec_CAF1 78337 115 + 1 GCGUUUAGGGGCGGGCCGGCAAGAGGCGGAGGCACGCCCCAUUCGGAUAACACCAAUGAAAUAUAAGGCCACUCUGCAAUAAUAGAGUAUGCCGUACAACUGAGCAGUCGGUGG-G .((..(.((((((.(((.((.....))...))).)))))))..)).....((((............(((.((((((......))))))..))).....(((....))).)))).-. ( -38.50) >DroSim_CAF1 74872 100 + 1 GCGGUUAGUG---------------GCGGAGGCACGCCCCAUUCGGAUAACACCAAUGAAAUAUAAGGCCACUCUGCAAUAAUAGAGUGUGCCGCACAACUGAGCAGUCGGUGG-G .(((...(.(---------------(((......)))))...))).....((((............((((((((((......))))))).)))((........))....)))).-. ( -31.80) >DroYak_CAF1 68479 99 + 1 ----AUAGGG------CGGUAUG------GGGCACGCCCCAUUCAGAUAACACCAAUGAAAUACAAGGCCACUCUGCAAUAAUAGAGUGUGCCGCACAACUGAGCAGUCGGUGG-A ----......------.((.(((------(((....))))))))......((((............((((((((((......))))))).)))((........))....)))).-. ( -33.70) >consensus GCGGUUAGGG______CGGUAUG__GCGGAGGCACGCCCCAUUCGGAUAACACCAAUGAAAUAUAAGGCCACUCUGCAAUAAUAGAGUGUGCCGCACAACUGAGCAGUCGGUGG_G .......((((((.(((.............))).))))))..........((((............((((((((((......))))))).)))((........))....))))... (-26.33 = -29.39 + 3.06)
Location | 2,307,155 – 2,307,271 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 83.94 |
Mean single sequence MFE | -35.16 |
Consensus MFE | -26.09 |
Energy contribution | -25.53 |
Covariance contribution | -0.56 |
Combinations/Pair | 1.12 |
Mean z-score | -1.82 |
Structure conservation index | 0.74 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.783997 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2307155 116 - 20766785 CCCCACCGACUGCUCAGUUGUGCGGCACACUCUAUUAUUGCAGAGUGGCCUUAUAUUUCAUUGGUGUUAUCCGAAUGGGGCGUGCCUCCGCCUCAUACCGGCCCGCCCCUAACCGC ...((((((..((.(....).))(((.((((((........)))))))))..........))))))..........((((((.(((.............))).))))))....... ( -39.52) >DroSec_CAF1 78337 115 - 1 C-CCACCGACUGCUCAGUUGUACGGCAUACUCUAUUAUUGCAGAGUGGCCUUAUAUUUCAUUGGUGUUAUCCGAAUGGGGCGUGCCUCCGCCUCUUGCCGGCCCGCCCCUAAACGC .-.((((((.((......((((.(((.((((((........))))))))).))))...))))))))..........((((((.(((...((.....)).))).))))))....... ( -37.80) >DroSim_CAF1 74872 100 - 1 C-CCACCGACUGCUCAGUUGUGCGGCACACUCUAUUAUUGCAGAGUGGCCUUAUAUUUCAUUGGUGUUAUCCGAAUGGGGCGUGCCUCCGC---------------CACUAACCGC .-.((((((..((.(....).))(((.((((((........)))))))))..........)))))).....((..(((((((......)))---------------).)))..)). ( -30.40) >DroYak_CAF1 68479 99 - 1 U-CCACCGACUGCUCAGUUGUGCGGCACACUCUAUUAUUGCAGAGUGGCCUUGUAUUUCAUUGGUGUUAUCUGAAUGGGGCGUGCCC------CAUACCG------CCCUAU---- .-.((((((..((.(....).))(((.((((((........)))))))))..........))))))........((((((((.(...------....)))------))))))---- ( -32.90) >consensus C_CCACCGACUGCUCAGUUGUGCGGCACACUCUAUUAUUGCAGAGUGGCCUUAUAUUUCAUUGGUGUUAUCCGAAUGGGGCGUGCCUCCGC__CAUACCG______CCCUAACCGC ......(((((....)))))...((((((((((........))))).(((((((......((((......)))))))))))))))).............................. (-26.09 = -25.53 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:12 2006