Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,754,961 – 11,755,053 |
Length | 92 |
Max. P | 0.989100 |
Location | 11,754,961 – 11,755,053 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -28.00 |
Consensus MFE | -19.91 |
Energy contribution | -21.80 |
Covariance contribution | 1.89 |
Combinations/Pair | 1.09 |
Mean z-score | -1.94 |
Structure conservation index | 0.71 |
SVM decision value | 2.15 |
SVM RNA-class probability | 0.989100 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11754961 92 + 20766785 UCUCCU------------CCAUGUUCUUGGAAACUGCUAAAGGCUGCGGAGUAGCGUC---UCUCUCUUCUGAGAGGUUUUCAUUGACCACUGAUAUUGCGUCGAGC .(((((------------(((......))))....((........))))))..((.((---((((......))))))......(((((((.......)).))))))) ( -22.90) >DroSec_CAF1 7456 107 + 1 UCUCCUUUACUUGUAGUUCCAUGUUCUUGGAACUUUCCAAAGGCUGCAGAGUAGCAGCCUUACACUCUUUUGAGAGGUUUUCAUUGACUACUGUAAUGANNNNNNNN ...(((.....((((((((((......))))))).....((((((((......)))))))))))(((....))))))...((((((.(....)))))))........ ( -29.00) >DroSim_CAF1 6666 107 + 1 UCUCCUCUACUUGUAGUUCCAUGUUCUUGGAACUUUCCAAAGGCUGCAGAGUAGCAGCCUUACACUGUUUUGAGAGGUUUUCAUUGACCACUGUAAUCGCGUCGAGC .((((((.((.((((((((((......))))))).....((((((((......)))))))))))..))...))).((((......))))..............))). ( -32.10) >consensus UCUCCU_UACUUGUAGUUCCAUGUUCUUGGAACUUUCCAAAGGCUGCAGAGUAGCAGCCUUACACUCUUUUGAGAGGUUUUCAUUGACCACUGUAAUCGCGUCGAGC ((((...........((((((......))))))......((((((((......))))))))..........))))((((......)))).................. (-19.91 = -21.80 + 1.89)
Location | 11,754,961 – 11,755,053 |
---|---|
Length | 92 |
Sequences | 3 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 75.08 |
Mean single sequence MFE | -28.31 |
Consensus MFE | -14.90 |
Energy contribution | -17.90 |
Covariance contribution | 3.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.39 |
Structure conservation index | 0.53 |
SVM decision value | 0.96 |
SVM RNA-class probability | 0.889552 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11754961 92 - 20766785 GCUCGACGCAAUAUCAGUGGUCAAUGAAAACCUCUCAGAAGAGAGA---GACGCUACUCCGCAGCCUUUAGCAGUUUCCAAGAACAUGG------------AGGAGA (((((((.((.......))))).........(((((....))))).---)).))..((((((........))....((((......)))------------))))). ( -22.70) >DroSec_CAF1 7456 107 - 1 NNNNNNNNUCAUUACAGUAGUCAAUGAAAACCUCUCAAAAGAGUGUAAGGCUGCUACUCUGCAGCCUUUGGAAAGUUCCAAGAACAUGGAACUACAAGUAAAGGAGA ........(((((((....)).))))).....((((.......(((((((((((......)))))))).....(((((((......)))))))))).......)))) ( -29.74) >DroSim_CAF1 6666 107 - 1 GCUCGACGCGAUUACAGUGGUCAAUGAAAACCUCUCAAAACAGUGUAAGGCUGCUACUCUGCAGCCUUUGGAAAGUUCCAAGAACAUGGAACUACAAGUAGAGGAGA ....(((((.......)).)))........((((((..........((((((((......)))))))).....(((((((......)))))))....).)))))... ( -32.50) >consensus GCUCGACGCAAUUACAGUGGUCAAUGAAAACCUCUCAAAAGAGUGUAAGGCUGCUACUCUGCAGCCUUUGGAAAGUUCCAAGAACAUGGAACUACAAGUA_AGGAGA ................................((((..........((((((((......)))))))).....(((((((......)))))))..........)))) (-14.90 = -17.90 + 3.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:16 2006