| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,751,922 – 11,752,018 |
| Length | 96 |
| Max. P | 0.797231 |
| Location | 11,751,922 – 11,752,018 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | forward |
| Mean pairwise identity | 80.63 |
| Mean single sequence MFE | -32.30 |
| Consensus MFE | -20.13 |
| Energy contribution | -21.80 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.797231 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11751922 96 + 20766785 GGUAAUGGUAAUGCU-A--AUCAUCUAAAUAGACCCUUUGCCUGUGGCGAUCUGGAGUCGCAGGUGAAGACCGCUCUGCUGGACCUAACGGCCAAGGGA (((.(((((......-.--)))))...........(((..((((((((........))))))))..)))))).((((..(((.((....))))))))). ( -33.40) >DroPse_CAF1 220 94 + 1 CCAAACAAUAUUCCUCA--AUCAUC---ACAGACCAUUCGCCUGUGGCGAUCUGGAAGCCCAGGUGAAGACAGCCCUCAUGGACCUCACUGCCAAGGGC .................--......---........((((((((.(((.........)))))))))))....(((((..(((.(......))))))))) ( -26.20) >DroSec_CAF1 4545 96 + 1 GGUAAUGGUAAUGCU-A--AUCAUCUAAAUAGACCCUUCGCCUGUGGCGAUCUGGAGUCGCAGGUGAAGACCGCUCUGCUGGACCUAACGGCCAAGAGA (((.(((((......-.--)))))...........(((((((((((((........)))))))))))))))).((((..(((.((....))))))))). ( -36.70) >DroSim_CAF1 3755 96 + 1 GGUAAUGGUAAUGCU-A--AUCAUCUAAAUAGACCCUUCGCCUGUGGCGAUCUGGAGUCGCAGGUGAAGACCGCUCUGCUGGACCUAACGGCCAAGGGA (((.(((((......-.--)))))...........(((((((((((((........)))))))))))))))).((((..(((.((....))))))))). ( -35.80) >DroEre_CAF1 4054 98 + 1 AGCAUACAAUAUGCU-ACAGUCCCUUAAAUAGACCCUUUGCCUGCGGGGAUCUGGAGUCGCAGGUGAAGACGGCUCUGCUGGACCUCACGGCCAAGGGA ((((((...))))))-....((((((...(((((((((..(((((((..........)))))))..)))..)).))))..((.((....)))))))))) ( -35.50) >DroPer_CAF1 3277 94 + 1 CCAAACAAUAUUCCUCC--AUCAUC---ACAGACCAUUCGCCUGUGGCGAUCUGGAAGCCCAGGUGAAGACAGCCCUCAUGGACCUCACUGCCAAGGGC .................--......---........((((((((.(((.........)))))))))))....(((((..(((.(......))))))))) ( -26.20) >consensus GGUAAUGAUAAUGCU_A__AUCAUCUAAAUAGACCCUUCGCCUGUGGCGAUCUGGAGUCGCAGGUGAAGACCGCUCUGCUGGACCUAACGGCCAAGGGA ...................................((((((((((((..........))))))))))))....((((..(((.((....))))))))). (-20.13 = -21.80 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:14 2006