Locus 3506

Sequence ID 2R_DroMel_CAF1
Location 11,744,924 – 11,745,026
Length 102
Max. P 0.987233
window5713

overview

Window 3

Location 11,744,924 – 11,745,026
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 92.96
Mean single sequence MFE -23.78
Consensus MFE -21.18
Energy contribution -21.02
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -1.80
Structure conservation index 0.89
SVM decision value 2.07
SVM RNA-class probability 0.987233
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11744924 102 - 20766785
UACAUAGCAACAACAAAGAGGCCAGCAAUAACACAAUCAGCUGAUCCGACAGUGCUGAAAAGGGCUGGCAUGUUUAAAUGCAACUGGUAGGUAUUAUUAAAA
(((.((.((..........((.((((.............))))..))..((((.((....)).))))((((......))))...)).)).)))......... ( -20.82)
>DroSec_CAF1 11596 100 - 1
UACAUAGCAACAACAAAGAGGCCAGCAAUAACACAAUCAGCUGAUCCGCCAGUGCUGAAAAGAGCUGGCAUGCUUAAAUGCAACUGGUAGGUAUUA--AAAA
(((.((.((..........((.((((.............))))..))((((((.((....)).)))))).(((......)))..)).)).)))...--.... ( -24.02)
>DroSim_CAF1 7817 99 - 1
UACAUAGCAACAACAAAGAGGCCAGCAAUAACACAAUCAGCUGAUCCGCCAGUGCUGAAAAGAGCUGGCAUGCUUAAAUGCAACUGGUAGGUAUUA--AAA-
(((.((.((..........((.((((.............))))..))((((((.((....)).)))))).(((......)))..)).)).)))...--...- ( -24.02)
>DroEre_CAF1 21432 100 - 1
UACAUAGUAACAACAAAUGGGCCAGCAAUAACACAAUCAGCUGAUUCGCCAGUGCUGAAAAGGGCCGGCAUGUUUGAAUGCAACUGGUAGGUAUUA--AAAG
(((.((((..((.(((((((..((((.............))))..))(((.((.((....)).)).)))..)))))..))..))))))).......--.... ( -21.82)
>DroYak_CAF1 11981 100 - 1
UACAUAGCAACAACAAAUGGGCCAGCAAUAACACAAUCAGCUGAUCCGCCAGUGCUGCAAAGGGCUGGCAUGCUUAAAUGCAACUGGUAGGUAUUU--CAAA
(((.((.((.........((..((((.............))))..))((((((.((....)).)))))).(((......)))..)).)).)))...--.... ( -28.22)
>consensus
UACAUAGCAACAACAAAGAGGCCAGCAAUAACACAAUCAGCUGAUCCGCCAGUGCUGAAAAGGGCUGGCAUGCUUAAAUGCAACUGGUAGGUAUUA__AAAA
(((.((.((..........((.((((.............))))..))((((((.((....)).)))))).(((......)))..)).)).)))......... (-21.18 = -21.02 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:11 2006