| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,739,300 – 11,739,413 |
| Length | 113 |
| Max. P | 0.663382 |
| Location | 11,739,300 – 11,739,413 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.08 |
| Mean single sequence MFE | -28.65 |
| Consensus MFE | -17.14 |
| Energy contribution | -17.42 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.36 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.60 |
| SVM decision value | 0.27 |
| SVM RNA-class probability | 0.663382 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11739300 113 - 20766785 AUUAUCCAAUCCUCCAACGCAUUUUGUCAAACCACUCAUCAGGCAAAAUGCAUUCAGGAAGAAAAGGAAGUAGGCGAAUUCUCCGCUCUAAUUGUUGCCAACGAGUCGGGCCU ....(((..((.(((...((((((((((.............)))))))))).....))).))...)))...(((((....).((((((...(((....))).))).))))))) ( -26.92) >DroSec_CAF1 6020 110 - 1 AUUAUCCAAUCCUCCAACGCAUUUUGUCAAACCACGCACCAGGCAAAAUGCAUUCAGGA---AAAGGAAGCAGGCGAAUUCUUCGCUCUUAUCGUAGCCAACGAGUCGGGCCU ....(((..((((.....((((((((((.............))))))))))....))))---...))).((.(((((.....)))))((..((((.....))))...)))).. ( -26.82) >DroSim_CAF1 2221 110 - 1 AUUAUCCAAUCCUCCAACGCAUUUUGCCAAACCACGCACCAGGCAAAAUGCAUUCAGGA---AAAGGAAGCAGGUGAAUUCUCCGCUCUAAUUGUAGCCAACGAGUCGGGCCU ....(((..((((.....((((((((((.............))))))))))....))))---...)))....((.(....).))((((...((((.....))))...)))).. ( -28.62) >DroEre_CAF1 15810 110 - 1 AGCAUUCAAUCCUCCAACGCAUUUUGCCAAACCACUCACCAGGCAAAAUGCAUUCAGGA---AAAGGAAGGAGGAGAAUUCUCCACUCUAAUUGUAGCCAACGAGGCAGGUCU ((.((((..((((((...((((((((((.............)))))))))).(((....---....))))))))))))).))((((.......)).(((.....))).))... ( -31.62) >DroYak_CAF1 6257 110 - 1 AGUAUCCAAUCUUCAGACGCAUUCUGCCAAACCACUCACCAGGCAAAAUGCAUUCAGGA---AAAGCAAGGAGACGAAUUCUCCGCUCUAAUUGUAGACAACGAGGCGGGCCU ....(((..((....)).(((((.((((.............)))).))))).....)))---...((..(....).......((((.((..(((....)))..)))))))).. ( -26.82) >DroAna_CAF1 6270 107 - 1 ACGAUAGAGUCCUCCUCAUCCUUUUGCCAAGUAGCUUAUUCGGCGGAUUGCAAUCUGGG---AGAA---ACGUUAAGUUUCUCUGCCCUAAUAGUUGCCCACGAGGACAGUCU ........((((((..((......))....((((((.....(((((((....)))).((---((((---((.....))))))))))).....))))))....))))))..... ( -31.10) >consensus AUUAUCCAAUCCUCCAACGCAUUUUGCCAAACCACUCACCAGGCAAAAUGCAUUCAGGA___AAAGGAAGCAGGCGAAUUCUCCGCUCUAAUUGUAGCCAACGAGGCGGGCCU .........((((.....((((((((((.............))))))))))....)))).........................((((...((((.....))))...)))).. (-17.14 = -17.42 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:07 2006