| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,735,332 – 11,735,434 |
| Length | 102 |
| Max. P | 0.847649 |
| Location | 11,735,332 – 11,735,434 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 66.89 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -5.25 |
| Energy contribution | -6.50 |
| Covariance contribution | 1.25 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.21 |
| SVM decision value | 0.78 |
| SVM RNA-class probability | 0.847649 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11735332 102 + 20766785 UAAACCGAAAAUUAGGCAUGCCCAGAAUUGCAACAUGUACUGGAAGCA------ACAGCAACAACGACAAUAGCCUGCCGCA-AAACGUGUGGCAA----GCGAAUAGCAG------CA ...............((.(((((((...(((.....)))))))..((.------...)).............((.(((((((-.....))))))).----)).....))))------). ( -24.70) >DroVir_CAF1 26592 90 + 1 UAUAACGAAAAUUAGCCAUGCUCAUUGUUGCAACAC--A-------------------CAACAACAACAACA---CGCGGCACAAACGUGUGGCAA----GCGAACGGCACCAGCAAC- ..............(((.((((..((((((......--.-------------------))))))........---.((.((((....)))).)).)----)))...))).........- ( -20.20) >DroPse_CAF1 20282 105 + 1 UAAACCGAAAAUUAGCCAUGCCC---AUUGCAACAUGAUGUGGAAG--------GCAGCCACAACGACAAUUGCCUGCCACA-AAGCGU--GGCAAGCCAGCGAAUGGCAAAAGCGAAA .....((.......(((((((.(---((......))).(((((.((--------((((............)))))).)))))-..))))--)))..((((.....)))).....))... ( -33.40) >DroWil_CAF1 29301 91 + 1 UAAAAUGAAAAUUAGCCAUGCUCAUUGUUGCAACAU--AAGAGAAGCAGUAAAUACAACAACAACAACAAAAGCC----ACAAAAACGUGUGGCAA----G------------------ ..............((....(((..(((....))).--..)))..)).........................(((----(((......))))))..----.------------------ ( -14.50) >DroAna_CAF1 21348 100 + 1 UAACCCGAAAAUUAGGCAUGCCCAGCAUUGCAACA--UACUGGCAACA------ACAGCAACAACGACAAUGGCCUGCCGCA-AAACGUGUGGCAA----GCGAAUGGCAA------CA ....((........))..((((...((((((....--..(((......------.))).......).)))))((.(((((((-.....))))))).----))....)))).------.. ( -24.42) >DroPer_CAF1 20998 105 + 1 UAAACCGAAAAUUAGCCAUGCCC---AUUGCAACAUGAUGUGGAAG--------GCAGCCACAACGACAAUUGCCUGCCACA-AAGCGU--GGCAAGCCAGCGAAUGGCAAAAGCGAAA .....((.......(((((((.(---((......))).(((((.((--------((((............)))))).)))))-..))))--)))..((((.....)))).....))... ( -33.40) >consensus UAAACCGAAAAUUAGCCAUGCCCA__AUUGCAACAU__ACUGGAAG________ACAGCAACAACGACAAUAGCCUGCCACA_AAACGUGUGGCAA____GCGAAUGGCAA______CA ..................(((........)))............................................((((((......))))))......................... ( -5.25 = -6.50 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:04 2006