Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,731,759 – 11,731,855 |
Length | 96 |
Max. P | 0.631266 |
Location | 11,731,759 – 11,731,855 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 82.00 |
Mean single sequence MFE | -16.98 |
Consensus MFE | -11.02 |
Energy contribution | -11.06 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.07 |
Mean z-score | -1.79 |
Structure conservation index | 0.65 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.631266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11731759 96 - 20766785 CUAAUGCCAAA----AAUCAGAAAUAAAAAUUUCACCUCCGGUCACACGCUUGAGAAGACACACUCGACAGCAACAGUAACGCAAACUGGCGGAAUGAAA ...........----..((((((((....)))))...((((.......(((((((........))))..)))..((((.......)))).)))).))).. ( -16.50) >DroSec_CAF1 16993 96 - 1 CUAAUGCCAAA----AAUCAGAAAUAAAAAUUUCACCUCCGGUCACACGCUUGAGAAGACACACUCGACAGCAACGGCAACGCAAACUGGCGGAAUGAAA ...........----..((((((((....))))).((.(((((.....(((((((........))))..)))..((....))...))))).))..))).. ( -20.10) >DroSim_CAF1 17766 80 - 1 CUAAUGCCAAA----AAUCAGAAAUAAAAAUUUCACCUCCGGUCACACGCUUGAGAAGACAC----------------AACGCAAACUGGCGGAAUGAAA ...........----..((((((((....))))).((.(((((....((.(((........)----------------))))...))))).))..))).. ( -13.00) >DroYak_CAF1 17286 96 - 1 CUAAUGCCAAA----AAUCAGAAAUAAAAAUUUCACCUCCGGUCACACGCUUGAAAAGUCACACUCGACAGCAGCAACAACGCAAACUGGCGGAAUAAAA ...........----.....(((((....))))).((.(((((.....(((......(((......)))))).((......))..))))).))....... ( -16.00) >DroAna_CAF1 16749 85 - 1 CUAAUGCCAAAAAAAAAUCAGAAAUGAAAAUUUCACCUCCGGUCACACGCUUGAGGAGUCAC---------------CAGCACACUCCGGUGAAAUGAAU .................(((....)))..((((((((((.(((.....))).))(((((...---------------......))))))))))))).... ( -19.30) >consensus CUAAUGCCAAA____AAUCAGAAAUAAAAAUUUCACCUCCGGUCACACGCUUGAGAAGACACACUCGACAGCA_C__CAACGCAAACUGGCGGAAUGAAA ....((((............(((((....)))))..(((.(((.....))).))).................................))))........ (-11.02 = -11.06 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:57 2006