Locus 3497

Sequence ID 2R_DroMel_CAF1
Location 11,723,950 – 11,724,067
Length 117
Max. P 0.692359
window5697

overview

Window 7

Location 11,723,950 – 11,724,067
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 89.69
Mean single sequence MFE -23.98
Consensus MFE -19.29
Energy contribution -19.98
Covariance contribution 0.69
Combinations/Pair 1.13
Mean z-score -1.63
Structure conservation index 0.80
SVM decision value 0.33
SVM RNA-class probability 0.692359
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11723950 117 - 20766785
---AAUUUUAUUUUACGCGUAGAAUAAUGAAGUGAAUCAGCUUUAUACAUUUUCUAUAAACUGACUUUGUAUUGAGCAAUAUUUAAGCAGUGAUUUUCUUAUUUAUCACUGGCGUGACCU
---.........((((((...(((((.(((......)))((((.(((((...((........))...))))).))))..)))))...(((((((..........)))))))))))))... ( -26.30)
>DroSec_CAF1 9254 115 - 1
---AAUUAUAUUUAACACGCAGAAUAAUG-AGUGAAUCAGCUUAAUACAUU-UCUCUAAACUGACUUCGUAUUGAGCAAUAUUUAAGCAGUGAUUUUCUUAUUUAUCACUGGCGUGACCU
---............(((((.(((((.((-(.....)))((((((((((..-((........))..).)))))))))..)))))...(((((((..........)))))))))))).... ( -29.20)
>DroSim_CAF1 10001 116 - 1
---AAUUAUAUUUAACACGUAGAAUAAUGGAGUGAAUCAGCUUUAUACAUU-UAUCUAAACUGACUUCGUAUUGAGCAAUAUUUAAGCAGUGAUUUUCUUAUUUAUCACUGGCGUGACCU
---............(((((.(((((...((.....)).((((.((((...-..((......))....)))).))))..)))))...(((((((..........)))))))))))).... ( -22.30)
>DroYak_CAF1 9409 119 - 1
UGAAAUUUUAUUUUAAACGCAGAAAAAUAAAGUGAAUCAGCCUUAUAAAUU-UCUAUGAACUGACUUUUUAUUGAGCAAUAUUUAAGCAGUGAUUUUCGUAUUUAUCAGUGGCGUGACCU
(((.((((((((((.........))))))))))...)))(((..((((((.-.......((((.(((..((((....))))...))))))).........))))))....)))....... ( -18.13)
>consensus
___AAUUAUAUUUAACACGCAGAAUAAUGAAGUGAAUCAGCUUUAUACAUU_UCUAUAAACUGACUUCGUAUUGAGCAAUAUUUAAGCAGUGAUUUUCUUAUUUAUCACUGGCGUGACCU
...............(((((...................((((.(((((...((........))...))))).))))..........(((((((..........)))))))))))).... (-19.29 = -19.98 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:56 2006