Locus 3496

Sequence ID 2R_DroMel_CAF1
Location 11,722,492 – 11,722,586
Length 94
Max. P 0.518364
window5696

overview

Window 6

Location 11,722,492 – 11,722,586
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 90.43
Mean single sequence MFE -29.63
Consensus MFE -26.40
Energy contribution -26.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 0.89
SVM decision value -0.03
SVM RNA-class probability 0.518364
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11722492 94 + 20766785
GGCUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAGAGUGCUAACCAUUACACCAUGGAACCACCGUAUUGGUCCUGGG
..((((((..((((((((.......)))))....((((((.....)))))).(((....((((......))))...))).....))).)))))) ( -29.10)
>DroVir_CAF1 9639 94 + 1
AAGCCAGGUUCCACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAGAGUGCUAACCAUUACACCAUGGAACCAACUUGCCCGGGUUGGC
..(((.((((((((((((.......)))))....((((((.....))))))...................)))))))(((((....)))))))) ( -32.20)
>DroEre_CAF1 7918 94 + 1
GGCUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAGAGUGCUAACCAUUACACCAUGGAACCGCCGUAUUGGUCCUGAG
..((((((((((((((((.......)))))....((((((.....))))))...................)))))))(((.....)))..)))) ( -30.20)
>DroYak_CAF1 7911 94 + 1
GGCUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAGAGUGCUAACCAUUACACCAUGGAACCACCGUAUUGGUCCUGGG
..((((((..((((((((.......)))))....((((((.....)))))).(((....((((......))))...))).....))).)))))) ( -29.10)
>DroMoj_CAF1 9681 94 + 1
AAGCCAGGUUCCACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAGAGUGCUAACCAUUACACCAUGGAACCAACUUGCCCGGCUUGCC
(((((.((((((((((((.......)))))....((((((.....))))))...................))))))).........)))))... ( -28.90)
>DroAna_CAF1 9136 94 + 1
GAGUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAGAGUGCUAACCAUUACACCAUGGAACCAACGUGUUGGCCAUGAG
......((((((((((((.......)))))....((((((.....))))))...................)))))))..((((.....)))).. ( -28.30)
>consensus
GACUCAGGUUCCACCGAGAUUUGAACUCGGAUCGCUGGAUUCAGAGUCCAGAGUGCUAACCAUUACACCAUGGAACCAACGUAUUGGUCCUGGG
......((((((((((((.......)))))....((((((.....))))))...................)))))))................. (-26.40 = -26.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:55 2006