Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,713,223 – 11,713,315 |
Length | 92 |
Max. P | 0.835535 |
Location | 11,713,223 – 11,713,315 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 75.65 |
Mean single sequence MFE | -27.08 |
Consensus MFE | -15.36 |
Energy contribution | -16.33 |
Covariance contribution | 0.97 |
Combinations/Pair | 1.18 |
Mean z-score | -1.78 |
Structure conservation index | 0.57 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835535 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11713223 92 + 20766785 AUCAAGGAAUGAUGCGACCCCGGCUGAUCCCUCACAUUGGCAUCAGCUCA----CUUAACCAACAGCUGGGGCUGUGCAU-----CUGGUCUUUAUUUGCC ...(((((..((((((.(((((((((............(((....)))..----.........)))))))))...)))))-----)...)))))....... ( -31.20) >DroPse_CAF1 3051 89 + 1 AUCAGCCCCUGAU----CCCUAGUUGA--CCUUGCACUGGCGUCAGCACAUCACCUCUACGUACGGCUGUACCCGUAUAUUGAUACCCGUAUAUA------ (((((........----.....(((((--(((......)).)))))).............((((((......)))))).)))))...........------ ( -17.20) >DroSec_CAF1 1877 92 + 1 AUCAAGGAAUGAUGCGACCCCGGCUGAUCCCUCACAUUGGCGUCAGCCCA----UAUAACCAACAGCUGGGGCUGUGCAU-----CUGGUCUUUAUUUGCC ...(((((..((((((.(((((((((............(((....)))..----.........)))))))))...)))))-----)...)))))....... ( -33.80) >DroSim_CAF1 1879 92 + 1 AUCAAGGAAUGAUGCGACCCCGGCUGAUCCCUCACAUUGGCGUCAGCCCA----CUUAACCAACAGCUGGGGCUGUGCAU-----CUGGUCUUUAUUUGCC ...(((((..((((((.(((((((((............(((....)))..----.........)))))))))...)))))-----)...)))))....... ( -33.80) >DroEre_CAF1 1881 84 + 1 AUCAAGGAA-AAUGCGACCCGAGCUGAUCCC-------UGCGUCAGCCCA----CUGAACCAACAACUGGGGCUGUGCAU-----CUGGUCUUUAUUUGCC .....((.(-((((.((((.((((((((...-------...)))))).((----(.(..(((.....)))..).)))..)-----).))))..))))).)) ( -23.10) >DroYak_CAF1 1926 92 + 1 AUCAAGGAAUGAUGCGACCUCAGCUGAUCCCGCACACUAGCGUCAGCCCA----CUUAACCAACAGCUGGGACUGUGCAU-----CUGGUCAUUAUUUGCC ......((..((((((..((((((((....(((......)))..((....----)).......))))))))....)))))-----)...)).......... ( -23.40) >consensus AUCAAGGAAUGAUGCGACCCCAGCUGAUCCCUCACAUUGGCGUCAGCCCA____CUUAACCAACAGCUGGGGCUGUGCAU_____CUGGUCUUUAUUUGCC ...............((((...((((((.((.......)).))))))...............(((((....)))))...........)))).......... (-15.36 = -16.33 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:51 2006