Locus 3489

Sequence ID 2R_DroMel_CAF1
Location 11,697,328 – 11,697,431
Length 103
Max. P 0.611752
window5687

overview

Window 7

Location 11,697,328 – 11,697,431
Length 103
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 67.59
Mean single sequence MFE -22.19
Consensus MFE -8.43
Energy contribution -8.77
Covariance contribution 0.33
Combinations/Pair 1.11
Mean z-score -1.72
Structure conservation index 0.38
SVM decision value 0.16
SVM RNA-class probability 0.611752
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11697328 103 - 20766785
UGGCGUCUUCGGAUGCGGAAACCAUAAGAGCAAAGAUGGGGUGGAAAAUUACCUGCAAUUAUAAAAUGUAAA---UGUAAAAUGUUUAUUAAUUUGUUAACUUC-UC
..(((((....)))))(....)......((((((....((((((....))))))(((.((((.....)))).---)))..............))))))......-.. ( -19.70)
>DroVir_CAF1 12177 96 - 1
UGGCAUCUUCCGAAGCAGAAACCAUUAGUCCGAAUAUUGGAUGAAAUAUAACCUACAAUAACAA-CAAUAAUCCAUUUA-AUGCUGUAUC----GGUGAAU-----U
.....((..((((.((((....((((((...((.(((((.........................-))))).))...)))-))))))).))----)).))..-----. ( -16.31)
>DroPse_CAF1 12876 98 - 1
UGGCAUCUUCCGAUGCUGAAACCAUGAGGCCAAAAAUUGGGUGAAAUAUAACCUGGAACAAACAAACAUCCUUCAUAUA-UGCUUCCAUCGCCU--------UGGUU
.((((((....))))))..(((((..((((........((((........))))((((((...................-)).))))...))))--------))))) ( -22.81)
>DroSim_CAF1 322 100 - 1
UGGCGUCUUCGGAUGCGGAAACCAUUAGAGCAAAGAUGGGGUGAAAAAUUACCUGCAAUUAUAAAAUAUA-----UGUA-AUUGUUUAUUAAUUUGUUAACUU-GUU
..(((((....)))))(....)((....((((((....((((((....))))))(((((((((.......-----))))-))))).......))))))....)-).. ( -25.10)
>DroEre_CAF1 322 93 - 1
UGGCGUCUUCGGAUGCGGAAACCAUAAGACCAAAGAUGGGAUGAAAAAUUACCUGCAAUAAUGAAGUAUA-----UGUA-GUUUUUUAUCAACU--------UGUUC
..(((((....)))))(....).(((((.(((....)))(((((((((((((.(((.........)))..-----.)))-))))))))))..))--------))).. ( -26.40)
>DroPer_CAF1 12832 98 - 1
UGGCAUCUUCCGAUGCUGAAACCAUGAGGCCAAAAAUUGGGUGAAAUAUAACCUGGAACAAACAAACAUCCUUCAUAUA-UGCUUCCAUCGCCU--------UGGUU
.((((((....))))))..(((((..((((........((((........))))((((((...................-)).))))...))))--------))))) ( -22.81)
>consensus
UGGCAUCUUCCGAUGCGGAAACCAUAAGACCAAAGAUGGGGUGAAAAAUAACCUGCAAUAAUAAAAUAUA_U___UGUA_AUUUUUUAUCAACU________UGGUU
..(((((....)))))......................((((........))))..................................................... ( -8.43 =  -8.77 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:46 2006