Locus 3488

Sequence ID 2R_DroMel_CAF1
Location 11,695,425 – 11,695,539
Length 114
Max. P 0.531201
window5686

overview

Window 6

Location 11,695,425 – 11,695,539
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 96.84
Mean single sequence MFE -31.95
Consensus MFE -29.93
Energy contribution -30.33
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -1.12
Structure conservation index 0.94
SVM decision value -0.00
SVM RNA-class probability 0.531201
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11695425 114 - 20766785
GGGUGGAUGUUUGGCUGCGCUCUAACUGCGCAUCUAAAUAUAUCCCAGGAAAAUCGAUGAAAAGCGUUGCGAGCGUCACGGGUAUUAAUGGAAAAGUGGAGCGUGGGCAGCAAA
(((...((((((((.(((((.......))))).))))))))..)))...................(((((..(((((((................)))..))))..)))))... ( -35.29)
>DroSec_CAF1 35499 114 - 1
GGGUGGAUGUUUGGCUUCUCGCUAACUGCGCAUCUAAAUAUAUCCCAGGAAAAUCGAUGAAAAGCGUUGCGAACGUCAUGAGUAUUAAUGGAAAAGUGGAGCGUGGGCAGCAAA
(((...((((((((.....(((.....)))...))))))))..)))...................(((((..(((((((...(........)...)))..))))..)))))... ( -25.40)
>DroSim_CAF1 31366 112 - 1
GGGUGGAUGUUUGGCUGCUCGCUAACUGCGCAUCUAAAUAUAUCCCAGGAAAAUCGAUGAAAAGCGUUGCGAACGUCAUGAGUAUUAAUGGA--AGUGGAGCGUGGGCAGCAAA
.............(((((((((...((.(((.(((((((((.((....)).....((((....((...))...))))....)))))..))))--.))).)).)))))))))... ( -29.30)
>DroEre_CAF1 31525 114 - 1
GGGUGGAUGUUUGGCUGCGCGCUAACUGCGCAUCUAAAUAUAUCCCAGGAAAAUCGAUGAAAAGCGUUGCGAACGUCACGAGUAUUAAUGGAAAAGUGGAGCGUGGGCAGCAAA
(((...((((((((.((((((.....)))))).))))))))..)))...................(((((..(((((((................)))..))))..)))))... ( -34.89)
>DroYak_CAF1 31939 114 - 1
GGGUGGAUGUUUGGCUGCGCGCUAACUGCGCAUCUAAAUAUAUCCCAGGAAAAUCGAUGAAAAGCGUUGCGAACGUCACGAGUAUUAAUGGAAAAGUGGAGCGUGGGCAGCAAA
(((...((((((((.((((((.....)))))).))))))))..)))...................(((((..(((((((................)))..))))..)))))... ( -34.89)
>consensus
GGGUGGAUGUUUGGCUGCGCGCUAACUGCGCAUCUAAAUAUAUCCCAGGAAAAUCGAUGAAAAGCGUUGCGAACGUCACGAGUAUUAAUGGAAAAGUGGAGCGUGGGCAGCAAA
(((...((((((((.((((((.....)))))).))))))))..)))...................(((((..(((((((................)))..))))..)))))... (-29.93 = -30.33 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:45 2006