Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,694,825 – 11,694,920 |
Length | 95 |
Max. P | 0.577016 |
Location | 11,694,825 – 11,694,920 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 97.69 |
Mean single sequence MFE | -20.32 |
Consensus MFE | -20.80 |
Energy contribution | -20.48 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.08 |
Mean z-score | -1.07 |
Structure conservation index | 1.02 |
SVM decision value | 0.09 |
SVM RNA-class probability | 0.577016 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11694825 95 + 20766785 UGGGGUUAAAGCUGGAGUUCAAAGCUUU-UUUGGCUAUUGUUUUCCUUUUUCCUCUCUCUUUUUGCACUUGAAAUUGCAAUUGCAUUUGCUCGCCG ...(((...(((.((((..(((((((..-...)))).)))..)))).................((((.(((......))).))))...))).))). ( -21.00) >DroSec_CAF1 34895 95 + 1 UGGGGUUAAAGCUGGAGUUCAAAGCUUU-UUUGGCUAUUGUUUUCCUUUUCCCUCUCUCUUUUUGCACUUGAAAUUGCAGUUGCAUUUGCUCGCCG ...(((...(((.((((..(((((((..-...)))).)))..)))).................((((.(((......))).))))...))).))). ( -20.70) >DroSim_CAF1 30763 95 + 1 UGGGGUUAAAGCUGGAGUUCAAAGCUUU-UUUGGCUAUUGUUUUCCUUUUCCCUCUCUCUUUUUGCACUUGAAAUUGCAGUUGCAUUUGCUCGCCG ...(((...(((.((((..(((((((..-...)))).)))..)))).................((((.(((......))).))))...))).))). ( -20.70) >DroEre_CAF1 30913 96 + 1 AGGGGUUAAAGCUGGAGUUCAAAGCUUUUUUUGGCUAUUGUUUUCCUUUUCCCUCUCUCUUUUUGCACUUGAAAUUGCAGUUGCAUUUGCUCGCCG (((((..(((...((((..(((((((......)))).)))..)))))))..))))).......((((.(((......))).))))........... ( -20.90) >DroYak_CAF1 31317 95 + 1 AGGGGUUAAAGCUGGAGUUCAAAGCUUU-UUUGGUUAUUGUUUUCCUUUUCCCUCUCUCUUUUUGCACUUGAAAUUGCAGUUGCAUUUGCUCGCCG (((((..(((...((((..(((((((..-...)))).)))..)))))))..))))).......((((.(((......))).))))........... ( -18.30) >consensus UGGGGUUAAAGCUGGAGUUCAAAGCUUU_UUUGGCUAUUGUUUUCCUUUUCCCUCUCUCUUUUUGCACUUGAAAUUGCAGUUGCAUUUGCUCGCCG ...(((...(((.((((..(((((((......)))).)))..)))).................((((.(((......))).))))...))).))). (-20.80 = -20.48 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:44 2006