Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,694,606 – 11,694,717 |
Length | 111 |
Max. P | 0.986629 |
Location | 11,694,606 – 11,694,717 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 97.84 |
Mean single sequence MFE | -26.00 |
Consensus MFE | -25.06 |
Energy contribution | -25.10 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.03 |
Mean z-score | -1.71 |
Structure conservation index | 0.96 |
SVM decision value | 2.05 |
SVM RNA-class probability | 0.986629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11694606 111 - 20766785 AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUAUCUAAAAGAAUGCCGCAGCAAAAAAGCCCAAAACGGAAAACUGUAAA ......((((((((.((.(..(((.(((((.((.....))))))).)))..)(((.(((.....((.....)).(((....)))...)))))).....))...)))))))) ( -26.80) >DroSec_CAF1 34676 111 - 1 AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUACCUAAAAGAAUGCCGCAGCAAAAAAGCCCAAAACGGAAAACUGUGCA .........(((((.((.(..(((.(((((.((.....))))))).)))..)(((((((..........)))).(((....)))......))).....))...)))))... ( -24.00) >DroSim_CAF1 30544 111 - 1 AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUACCUAAAAGAAUGCCGCAGCAAAAAAGCCCAAAACGGAAAACUGUAAA ......((((((((.((.(..(((.(((((.((.....))))))).)))..)(((((((..........)))).(((....)))......))).....))...)))))))) ( -26.20) >DroEre_CAF1 30697 110 - 1 AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUACCUAUAAGAAUGCCGCAGCAAA-AAGCCCAAAACGGAAAACUGUAAA ......((((((((.((.(..(((.(((((.((.....))))))).)))..)((((((((........))))).(((....)))..-...))).....))...)))))))) ( -26.50) >DroYak_CAF1 31100 110 - 1 AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUACCUAUAAGAAUGCCGCAGCAAA-AAGCCCAAAACGGAAAACUGUAAA ......((((((((.((.(..(((.(((((.((.....))))))).)))..)((((((((........))))).(((....)))..-...))).....))...)))))))) ( -26.50) >consensus AAACAAUUUGCAGUGUCAGGAGCGCUUUCCACACAUUCUGGGAAAUCGCAACGGGUCUUGAAUACCUAAAAGAAUGCCGCAGCAAAAAAGCCCAAAACGGAAAACUGUAAA ......((((((((.((.(..(((.(((((.((.....))))))).)))..)(((((((..........)))).(((....)))......))).....))...)))))))) (-25.06 = -25.10 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:43 2006