Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,694,489 – 11,694,582 |
Length | 93 |
Max. P | 0.697035 |
Location | 11,694,489 – 11,694,582 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 96.55 |
Mean single sequence MFE | -23.45 |
Consensus MFE | -22.38 |
Energy contribution | -22.18 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.08 |
Mean z-score | -1.16 |
Structure conservation index | 0.95 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.697035 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11694489 93 - 20766785 GCACAACGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGUUGUUGGCCUAUGGGGGAACGGGAAG ((((((.((((..............))))))))))..........((.((((.((((....(((((.......))))))))).)))).))... ( -25.34) >DroSec_CAF1 34549 93 - 1 GCUCAACGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGUUGUUGGCCUAUGGGGGAACGGGAAG ((.(((.(...........(((((....))))).).)))))....((.((((.((((....(((((.......))))))))).)))).))... ( -23.60) >DroSim_CAF1 30430 93 - 1 GCACAACGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGUUGUUGGCCUAUGGGGGAACGGGAAG ((((((.((((..............))))))))))..........((.((((.((((....(((((.......))))))))).)))).))... ( -25.34) >DroEre_CAF1 30583 90 - 1 GCACAACGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGU---UGGUCUAUGGGGGAACGGGAAG ((((((.((((..............))))))))))..........((.((((.((((....((((...---...)))))))).)))).))... ( -21.64) >DroYak_CAF1 30993 90 - 1 GCACAGCGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGU---UGGUCUAUGGGGGAACGGGAAG ((((((.((((..............))))))))))..........((.((((.((((....((((...---...)))))))).)))).))... ( -21.34) >consensus GCACAACGAAGAAAAUAAAACGAGAUUUCUUGUGCAUUGGCAGAACUGGUUUGCCCAGUAAUAGGUGUUGUUGGCCUAUGGGGGAACGGGAAG ((((((.((((..............))))))))))..........((.((((.((((....(((((.......))))))))).)))).))... (-22.38 = -22.18 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:42 2006