| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,693,352 – 11,693,471 |
| Length | 119 |
| Max. P | 0.915112 |
| Location | 11,693,352 – 11,693,471 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 87.44 |
| Mean single sequence MFE | -29.02 |
| Consensus MFE | -23.36 |
| Energy contribution | -23.28 |
| Covariance contribution | -0.08 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.80 |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.915112 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11693352 119 + 20766785 UUAUAUGGCAUAAAUAAUUGGAAACCCAUUUUGUUCACUCACGGAUAGGCGU-UGUGGUUCCGCAAAAAAAAAGCUGACGAAGGUCCAUUUCCUUAUCAGCAUUUUAAAUAGCGCGCCAA .....((((.........(((....)))..((((((......))))))((((-((((....)))....((((.(((((..((((.......)))).))))).))))....))))))))). ( -30.60) >DroSec_CAF1 33417 119 + 1 UUAUAUGGCAAAAAUAGUUGGAAAUCCAUUUUGUUCACUAACGAAUAAGCGU-UGUGGUUCCGCAAAAAAAAAGCUGACGAAGGUCCAUUUCCUUAUCAGUAUUUUAAAUAGCGCGCCAA .....((((.........(((....)))..((((((......))))))((((-((((....)))....((((.(((((..((((.......)))).))))).))))....))))))))). ( -30.70) >DroSim_CAF1 29299 119 + 1 UUAUAUGGCAUAAAUAAUUGGAAAUCCAUUUUGUUCACUAACGAAUAAGCGU-UGUGGUUCCGCAAAAAAAAAGCUGACGAAGGUCCAUUUCCUUAUCAGUAUUUUAAAUAGCGCGCCAA .....((((.........(((....)))..((((((......))))))((((-((((....)))....((((.(((((..((((.......)))).))))).))))....))))))))). ( -30.70) >DroEre_CAF1 29433 117 + 1 AUAUAUGGUAAAAAUAAUUGGAAAUCCAUUUUGAUCACUAACUGGCAAGCUG-UGUGGUUCCGUACAA--AAAGCUGACGAAGGUCAAUUUCCUUAUCAGUAUUUCGAACUACGCGCCAA .....((((......((.(((....))).)).....))))..((((.....(-((((((((......(--((.(((((..((((.......)))).))))).))).))))))))))))). ( -26.20) >DroYak_CAF1 29837 119 + 1 UUAUAUGGCAUAAAUAAUUGGA-UUCCAUUUUGAUCACUAACUGGUAGGCGGACACGGUUCCGUACAAAAAAAGCUGACGAAGGUCCAUUUCCUUAUCAGUAUUUUAAACUGCGCGCCGA .....((((.......((..((-......))..)).........(((((((((......)))))....((((.(((((..((((.......)))).))))).))))...))))..)))). ( -26.90) >consensus UUAUAUGGCAUAAAUAAUUGGAAAUCCAUUUUGUUCACUAACGGAUAAGCGU_UGUGGUUCCGCAAAAAAAAAGCUGACGAAGGUCCAUUUCCUUAUCAGUAUUUUAAAUAGCGCGCCAA .....((((.........(((....)))..((((((......))))))((((.((((....))))........(((((..((((.......)))).)))))..........)))))))). (-23.36 = -23.28 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:41 2006