Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,691,189 – 11,691,289 |
Length | 100 |
Max. P | 0.512142 |
Location | 11,691,189 – 11,691,289 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 91.89 |
Mean single sequence MFE | -24.81 |
Consensus MFE | -22.47 |
Energy contribution | -22.80 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.56 |
Structure conservation index | 0.91 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.512142 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11691189 100 - 20766785 AAGUGCAUCCAGUUUUGUUUUAGCCUAUAAAAAGCUAUAUGUAUUACCAAUAUUCCAGAGGUGGAGGUGACUGUGGUUUCUACGGUCUACACACUCGGCU .(((((((..((((((..............))))))..))))))).........((.((((((.....((((((((...))))))))..))).))))).. ( -24.74) >DroSec_CAF1 31357 96 - 1 AAGUGCAUCCAUUUUUGUAUUAGCCUAUAAUAAGCUAUA----UAACCAAUAUUCCAGAGGUGGAUGUGACUGUGGUUUCUACGGUCUACACACUCGGCU .((((((((((((((((...((((.........))))((----(.....)))...)))))))))))).((((((((...))))))))....))))..... ( -25.50) >DroSim_CAF1 27237 96 - 1 AAGUGCAUCCAUUUUUGUAUUAGCCUAUAAUAAGCUAUA----AAACCCAUAUUUCAGAGGUGGAGGUGACUGUGGUUUCUACGGUCUACACACUCGGCU .((((((........))))))((((((((......))))----..............((((((.....((((((((...))))))))..))).))))))) ( -24.20) >consensus AAGUGCAUCCAUUUUUGUAUUAGCCUAUAAUAAGCUAUA____UAACCAAUAUUCCAGAGGUGGAGGUGACUGUGGUUUCUACGGUCUACACACUCGGCU .((((((........))))))((((((((......))))..................((((((.....((((((((...))))))))..))).))))))) (-22.47 = -22.80 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:37 2006