Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,294,219 – 2,294,316 |
Length | 97 |
Max. P | 0.551925 |
Location | 2,294,219 – 2,294,316 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 75.32 |
Mean single sequence MFE | -23.36 |
Consensus MFE | -4.99 |
Energy contribution | -4.82 |
Covariance contribution | -0.17 |
Combinations/Pair | 1.40 |
Mean z-score | -1.59 |
Structure conservation index | 0.21 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.551925 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2294219 97 + 20766785 ------AAUGAAUUCGCUGGGAGAACCAAUAACUCUUUCUAAGAGCUAUUUAAAC-----------GCUUCACUGUUUGAAUGACGAUCAAAAUAUAAACAGUAGAUAACUUGA ------.....(((..(((((....)).....((((.....)))).(((((((((-----------(......))))))))))................)))..)))....... ( -14.00) >DroSec_CAF1 60125 106 + 1 ------AAUGAAUUUGCUGGGAGAACCAAUAACUCUUUCUAAGAGAUAGUUAAACGUUCUCUGGACGCUUCACUGUACGAGUG--GAUCAAAAUAUAAACAGUAGAUAACGUGA ------.....(((((((((((((((...(((((.((((...)))).)))))...)))))))....(.((((((.....))))--)).)..........))))))))....... ( -27.00) >DroSim_CAF1 60998 106 + 1 ------AAUGAAUUGGCUGGGAGAACCAAUAACUCUUUCUAAGAGAUAGUUAAACGUUCUCUUGACGCUUCACUGUACGAGUG--GAUCAAAAUAUAAACAGUAGAUAACGUGA ------.....(((.(((((((((((...(((((.((((...)))).)))))...)))))))....(.((((((.....))))--)).)..........)))).)))....... ( -23.10) >DroEre_CAF1 60142 103 + 1 GAAAACAACAAACUCGGCGGGAGAGCGAAGAGCGCUUUCUAAAAGAUAUUUGAACGUUCUCUGGACGCUUCACUGUACGAGUG--GAUCAAAAUAUAAACAGUGG--------- ...........(((((((((..(((((.((((.((.(((............))).)).))))...)))))..)))).))))).--....................--------- ( -26.00) >DroYak_CAF1 56242 112 + 1 GAUAACAAUUAGUUCGGCAAGAGAACUAAGAUCUCUUUCUCAAAAAUAUUUUAACGUUCACUUGACGCUUCACUGUACGAGUG--GAUCAAAAUAUUAAGAGAAGAUAACGAUA (((.....(((((((.......))))))).)))..((((((...((((((((...((((((((((((......))).))))))--))).))))))))..))))))......... ( -26.70) >consensus ______AAUGAAUUCGCUGGGAGAACCAAUAACUCUUUCUAAGAGAUAUUUAAACGUUCUCUGGACGCUUCACUGUACGAGUG__GAUCAAAAUAUAAACAGUAGAUAACGUGA ...........(((((..((((((.........))))))...............((((.....))))..........)))))................................ ( -4.99 = -4.82 + -0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:06 2006