Locus 3479

Sequence ID 2R_DroMel_CAF1
Location 11,688,944 – 11,689,054
Length 110
Max. P 0.926993
window5676

overview

Window 6

Location 11,688,944 – 11,689,054
Length 110
Sequences 6
Columns 116
Reading direction forward
Mean pairwise identity 70.91
Mean single sequence MFE -33.46
Consensus MFE -14.64
Energy contribution -15.28
Covariance contribution 0.64
Combinations/Pair 1.30
Mean z-score -2.05
Structure conservation index 0.44
SVM decision value 1.18
SVM RNA-class probability 0.926993
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11688944 110 + 20766785
---ACAUAUGUAUAUAAUGUAGGUCUUACAGUAGGUUGUGGUGUGCAUAUCAGCAUCGACA--AC-UGGUUCGGAAGGUCCUGCCACAUUGUAGAGUAUUACUUUGCAAACGUAGG
---...(((((.......(((((((((......((((((.(.((((......))))).)))--))-).......)))).)))))....((((((((.....))))))))))))).. ( -31.82)
>DroPse_CAF1 23725 107 + 1
GAUUCAU---------CUGCAUCGCUUACAGUAGUUCUGCGUGUGGGUGUUCUCCAGGGUACGCUUGAGUUUCGAGGAUCCUGCCACAUUGUACAGAAUCACGUCGCAAAAGUAGG
(((((..---------.((((.(((((((((((....))).)))))))).....((((((.(.((((.....)))))))))))......))))..)))))................ ( -27.20)
>DroSec_CAF1 29145 99 + 1
---AU-----------AUGCAGGUCUUACAAUAGGUUGUCGUGUGCACAUCAGCAACGACA--GC-UGCCUCGGAAGGUCCUGCCACAUUGUAGAGUAUUACUCUGCAGACGUAGG
---..-----------..(((((((((......(((((((((.(((......)))))))))--))-).......)))).)))))....((((((((.....))))))))....... ( -37.32)
>DroSim_CAF1 25022 99 + 1
---AU-----------AUGUAGCUCUUACAGUAGGUUGUCGUGUGCACAUCAGCAACGACA--GC-UGCCUCGGAAGGUCCUGCCACAUUGUAGAGUAUUACUCUGCAGACGUAGG
---..-----------........(((((.((((((((((((.(((......)))))))))--))-.((((....)))).))))....((((((((.....))))))))..))))) ( -33.60)
>DroEre_CAF1 25234 101 + 1
---AGAU---------CGAUAUACCAUACAAUAGGCUGUGGUUUUCAGAUUGGCGAGGACA--UA-UGGCUCGGAAGGUCCUGCCACAUUGUAGAGUAUUACUCUGCAGACGUAGA
---.(((---------(((...((((((........))))))..)).))))(((.(((((.--..-.....(....)))))))))...((((((((.....))))))))....... ( -29.90)
>DroYak_CAF1 25453 101 + 1
---AGAU---------CACUAUAUCUUACAGUAGGCUGUGGUCUGCAGAUUGGCGAGGAUA--UA-GGGAUCGGAAGGUCCUGCCACAUUGUAGAGUAUUACUCUGCAGACGUGGA
---....---------..(((((((((.((((..((........))..))))...))))))--))-)(((((....)))))..((((.((((((((.....))))))))..)))). ( -40.90)
>consensus
___ACAU_________AUGUAGAUCUUACAGUAGGUUGUCGUGUGCACAUCAGCAACGACA__GC_UGGCUCGGAAGGUCCUGCCACAUUGUAGAGUAUUACUCUGCAGACGUAGG
........................(((((.(((((........(((......)))...............((....)).)))))....((((((((.....))))))))..))))) (-14.64 = -15.28 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:35 2006