Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,674,449 – 11,674,556 |
Length | 107 |
Max. P | 0.605286 |
Location | 11,674,449 – 11,674,556 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 90.90 |
Mean single sequence MFE | -25.56 |
Consensus MFE | -18.10 |
Energy contribution | -19.18 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.12 |
Mean z-score | -2.12 |
Structure conservation index | 0.71 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.605286 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11674449 107 + 20766785 CUUGUUUCCAUUUUAUUUUAAUUACUUAAUUCAAGUGAUUUUCCGCCAGAACGAAAGUUCAAGUGACUACCGAUUUGCGGUCGAAUUAACUC-GGAAACUCGGCUCAU ...((((((..........((((((((.....))))))))(((.(((.((((....))))..(..(........)..)))).))).......-))))))......... ( -25.40) >DroSec_CAF1 14545 108 + 1 CUUGUUUCCAUUUUAAUUUAAUUACUAAAUUCAAGUGAUUUUCCGCCAGAACGAAAGUUCAAGUGACUACCGAUUUGCGGUCGAGUUAACUCCGGCAACUCUGCUCAU ........(((((.((((((.....)))))).))))).......(((.((((....))))...(((((((((.....))))..))))).....)))............ ( -24.70) >DroSim_CAF1 10515 108 + 1 CUUGUUUCCAUUUUAUUUUAAUUACUUAAUUCAAGUGAUUUUCCGCCAGAACGAAAGUUCAAGUGACUACCGAUUUGCGGUCGAGUUAACUCUGGCAACUCGGCUCAU ..((...((..........((((((((.....))))))))....((((((((....))))...(((((((((.....))))..)))))....)))).....))..)). ( -26.00) >DroEre_CAF1 10406 107 + 1 CUUGUUUCCAUUUUAUUUUAAUUAGUUCAUUCAAGUGAUUUUACGCCAGAACGAAAGUUCAAGUGACUGCUGAUUUGCGGUUGAGUUAACUC-GGAAACUCGUCUCAU ...((((((.................((((....)))).....(((..((((....))))..)))(((((......))))).(((....)))-))))))......... ( -26.30) >DroYak_CAF1 10512 103 + 1 CU----UCAAUUUUAUUUUAAUUAUUUCACUGAAGUGAUUUUCCGCAAGAACGAAAGUUCAAGUGACUACUGAUUUGCGGUCGAGUUAACUC-GGAAACUCGUCUCAU ..----........................(((..(((.(((((....((((....))))....(((..(......)..)))(((....)))-))))).)))..))). ( -25.40) >consensus CUUGUUUCCAUUUUAUUUUAAUUACUUAAUUCAAGUGAUUUUCCGCCAGAACGAAAGUUCAAGUGACUACCGAUUUGCGGUCGAGUUAACUC_GGAAACUCGGCUCAU ...((((((..........((((((((.....))))))))...(((..((((....))))..))).(.((((.....)))).)..........))))))......... (-18.10 = -19.18 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:30 2006