Locus 3474

Sequence ID 2R_DroMel_CAF1
Location 11,663,868 – 11,663,968
Length 100
Max. P 0.591843
window5669

overview

Window 9

Location 11,663,868 – 11,663,968
Length 100
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 76.98
Mean single sequence MFE -28.75
Consensus MFE -15.73
Energy contribution -15.40
Covariance contribution -0.33
Combinations/Pair 1.33
Mean z-score -1.66
Structure conservation index 0.55
SVM decision value 0.12
SVM RNA-class probability 0.591843
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11663868 100 + 20766785
---UUCUUUGGGCUUCAGAGUUAGGCCCAUCUUGGUAGCCUUGAUAUCACAGCUGGGAAGCUGUUUUUUCAGAGAGGCGGCUACAGCCUCCAUGUUCUUCACG
---.....(((((((.......)))))))...(((..(((((((....((((((....))))))....)))...))))(((....))).)))........... ( -31.00)
>DroPse_CAF1 1 102 + 1
-UAUUACUUCUCCUUCAACUGAACGCCCAAUUUAGUGGCCUUGAUGUCGCAAUCUGGCAGCUGCUUCUUCAGCUCAAGAGCCACUUGUUCCAUGUUCUUUACG
-...................(((((...(((..((((((((((((((((.....)))))((((......))))))))).)))))).)))...)))))...... ( -26.80)
>DroSim_CAF1 1 103 + 1
UUAUUCUUUGGGCUUCAGAGUUAGGCCCAUCUUGGUAGCCUUGAUAUCACAGCUGGGAAGCUGUUUCUUCAGAGAGGCGGCUACAGCCUCCAUGUUCUUCACG
........(((((((.......)))))))...(((..(((((((....((((((....))))))....)))...))))(((....))).)))........... ( -31.00)
>DroEre_CAF1 1 103 + 1
UUACUCUUUGGUCUUCAGAGUAAUGCCCAUUUUGGUAGCCUUGAUAUCGCAGCUGGGAAGCUGUUUCUUCAGACUGGCGGCUACGGCCUCCAUGUUCUUUACG
.........(((..(((((((.......)))))))..))).(((....((((((....))))))....)))((((((.(((....))).))).)))....... ( -30.20)
>DroYak_CAF1 1 103 + 1
UUACUCUUUGGUCUUCAAAGUAAGGCCCAUUUUGGUAGCCUUGAUAUCGCAGUUGGGAAGCUGUUUCUUCAGACUGGCUGCUACGGCCUCCAUGUUCUUCACG
.....(((((.....)))))..(((((.....((((((((((((....((((((....))))))....))))...)))))))).))))).............. ( -29.00)
>DroPer_CAF1 1 102 + 1
-UAUUACUUCUCUUUCAACUGAACGCCCAAUUUAGUGGCUUUGAUGUCGCAAUCUGGCAGCUGCUUCUUCAGCUCAAGAGCCACUUGUUCCAUGUUCUUUACG
-...................(((((...(((..((((((((((((((((.....)))))((((......)))))).))))))))).)))...)))))...... ( -24.50)
>consensus
_UAUUCUUUGGCCUUCAAAGUAAGGCCCAUUUUGGUAGCCUUGAUAUCGCAGCUGGGAAGCUGUUUCUUCAGACAGGCGGCUACAGCCUCCAUGUUCUUCACG
.....(((((.....)))))..............((((((((((....((((((....))))))....))))......))))))................... (-15.73 = -15.40 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:28 2006