Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,657,951 – 11,658,071 |
Length | 120 |
Max. P | 0.981218 |
Location | 11,657,951 – 11,658,071 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -39.41 |
Consensus MFE | -34.20 |
Energy contribution | -34.70 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.03 |
Mean z-score | -1.89 |
Structure conservation index | 0.87 |
SVM decision value | 0.81 |
SVM RNA-class probability | 0.857689 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11657951 120 + 20766785 AAUACAUAGCCAGUGUGGCAACUCCCUGCAGCGCUGCCACCUGCCGACAACCAGCUGUUGCUCACAAGCUGAUGAAACUUUGCCGCAUUUGCAAGUGCAGAAGCGACUGGCUGUUUAUAC .(((.((((((((((((((((.......((((((........)).((((((.....)))).))....))))........))))))).(((((....)))))....))))))))).))).. ( -40.26) >DroSim_CAF1 2702 120 + 1 AAUACAUAGCCAGUGUGGCAACUCCGUGCGGCGCUGCCACCUGCCAAAAACCAGCUGUUGCUCACAAGCUGAUGAAACUUUGCCGCAUUUGCAAGUGCAGAAGCGACUGACUGUUUAUAC .(((.((((.((((((((((.(.((....)).).))))))...........(((((((.....)).)))))............(((.(((((....))))).))))))).)))).))).. ( -35.60) >DroEre_CAF1 2871 120 + 1 AAUACCAAGUCAGUGUGGCAACUCCCUGCGGCGCUGCCACCUGCCGACAGCCAGCUGUUGCUCACAAGCUGAUGAAACUUUGCCGCAUUUGCAAGUGCAGAAGCGACUGACUGUUUAUAC .(((...((((((((((((((....((((((((........))))).))).(((((((.....)).)))))........))))))).(((((....)))))....)))))))...))).. ( -40.50) >DroYak_CAF1 2911 120 + 1 ACUUCAAAGCCAGUAUGGCAACACCCUGCGGCGCUGCCACUUGCUGACAGCCAGCUGUUGCUCACAAGCUGAUGAAACUUUGCCGCAUUUGCAAGUGCAGAAGCGACUGGCUGUUUAUAC .......(((((((...((.......((((((((((.((.....)).))))(((((((.....)).)))))..........))))))(((((....))))).)).)))))))........ ( -41.30) >consensus AAUACAAAGCCAGUGUGGCAACUCCCUGCGGCGCUGCCACCUGCCGACAACCAGCUGUUGCUCACAAGCUGAUGAAACUUUGCCGCAUUUGCAAGUGCAGAAGCGACUGACUGUUUAUAC .......(((((((((((((.(.((....)).).))))))...........(((((((.....)).)))))............(((.(((((....))))).))))))))))........ (-34.20 = -34.70 + 0.50)
Location | 11,657,951 – 11,658,071 |
---|---|
Length | 120 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 93.33 |
Mean single sequence MFE | -45.08 |
Consensus MFE | -42.15 |
Energy contribution | -41.65 |
Covariance contribution | -0.50 |
Combinations/Pair | 1.14 |
Mean z-score | -2.26 |
Structure conservation index | 0.94 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11657951 120 - 20766785 GUAUAAACAGCCAGUCGCUUCUGCACUUGCAAAUGCGGCAAAGUUUCAUCAGCUUGUGAGCAACAGCUGGUUGUCGGCAGGUGGCAGCGCUGCAGGGAGUUGCCACACUGGCUAUGUAUU (((((...(((((((.....((((....((....))((((.......(((((((.((.....))))))))))))).))))((((((((.((....)).))))))))))))))).))))). ( -44.71) >DroSim_CAF1 2702 120 - 1 GUAUAAACAGUCAGUCGCUUCUGCACUUGCAAAUGCGGCAAAGUUUCAUCAGCUUGUGAGCAACAGCUGGUUUUUGGCAGGUGGCAGCGCCGCACGGAGUUGCCACACUGGCUAUGUAUU .((((..((((..(((((...(((....)))...)))))...(((..(((((((.((.....)))))))))....)))..((((((((.((....)).))))))))))))..)))).... ( -44.20) >DroEre_CAF1 2871 120 - 1 GUAUAAACAGUCAGUCGCUUCUGCACUUGCAAAUGCGGCAAAGUUUCAUCAGCUUGUGAGCAACAGCUGGCUGUCGGCAGGUGGCAGCGCCGCAGGGAGUUGCCACACUGACUUGGUAUU ......((((((.(((((...(((....)))...)))))...........((((.((.....)))))))))))).(((((((((((((.((....)).)))))))).))).))....... ( -44.10) >DroYak_CAF1 2911 120 - 1 GUAUAAACAGCCAGUCGCUUCUGCACUUGCAAAUGCGGCAAAGUUUCAUCAGCUUGUGAGCAACAGCUGGCUGUCAGCAAGUGGCAGCGCCGCAGGGUGUUGCCAUACUGGCUUUGAAGU ......((((((.(((((...(((....)))...)))))...........((((.((.....)))))))))))).(((..(((((((((((....)))))))))))....)))....... ( -47.30) >consensus GUAUAAACAGCCAGUCGCUUCUGCACUUGCAAAUGCGGCAAAGUUUCAUCAGCUUGUGAGCAACAGCUGGCUGUCGGCAGGUGGCAGCGCCGCAGGGAGUUGCCACACUGGCUAUGUAUU ........((((((((((...(((....)))...)))))...(((..(((((((.((.....)))))))))....)))..((((((((.((....)).))))))))..)))))....... (-42.15 = -41.65 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:26 2006