Locus 3472

Sequence ID 2R_DroMel_CAF1
Location 11,656,598 – 11,656,717
Length 119
Max. P 0.968625
window5666

overview

Window 6

Location 11,656,598 – 11,656,717
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 94.96
Mean single sequence MFE -21.82
Consensus MFE -20.46
Energy contribution -20.18
Covariance contribution -0.28
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.94
SVM decision value 1.63
SVM RNA-class probability 0.968625
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11656598 119 + 20766785
AUUACUAAACGUUUAUACGCGGCUUUUAGAUGGAUAUACACAUAUUAUACACCGGAAACGAAUGUUCCACAUUAAAGUAAAAACUUUACAAAAAUUACGCACUAUUGAAAGCCGUCGAA
.................((((((((((((.((((((((.......))))...((....)).....))))...((((((....))))))................)))))))))).)).. ( -23.70)
>DroSec_CAF1 4711 119 + 1
AUUACUAAACGUAUAUACGCGGCUUUUAGAUGGAUAUACACAUAUUAUACACCGGAAAUGAAUGUUCCACAUUAAAGUAAAAAGUUUACAAAAAUUACGCACUAUUGAAAGCCGUCGAA
.................((((((((((((.(((....................((((.......))))........((((.....))))............))))))))))))).)).. ( -21.20)
>DroSim_CAF1 1407 119 + 1
AUUACUAAACGUAUAUACGCGGCUUUUAGAUGGAUAUACACAUAUUAUACACAGGAAAUGAAUGUUCCACAUUAAAGUAAAAAGUUUACAAAAAUUACGCACUAUUGAAAGCCGUCGAA
.................((((((((((((.(((....................((((.......))))........((((.....))))............))))))))))))).)).. ( -21.10)
>DroEre_CAF1 1649 119 + 1
AUUACUAAACGUUUAUACGCGGCUUUUAGAUCGAUAUACACAUAUUAUACACCGGAAAUGAAUGUUCCACAUUGAAGUAAAUAGUUUACAAAAAUUACGCACUUUUAAAGGCCGUCGAA
.................(((((((((((((.((....................((((.......))))........((((.....))))........))....))))))))))).)).. ( -20.50)
>DroYak_CAF1 1406 119 + 1
AUUACUAAACGUUUAUACGCGGCUUUUAGAUGGAUAUACACAUAUUAUACACCGGAAAUGAAUAUUCCACAUUGAAGUAAUUAGUUUACAAAAAUUACGCACUUUUAAAGGCCGUCGAA
.................((((((((((((((((((((....))))).......((((.......)))).))))(((((...((((((....))))))...)))))))))))))).)).. ( -22.60)
>consensus
AUUACUAAACGUUUAUACGCGGCUUUUAGAUGGAUAUACACAUAUUAUACACCGGAAAUGAAUGUUCCACAUUAAAGUAAAAAGUUUACAAAAAUUACGCACUAUUGAAAGCCGUCGAA
.................((((((((((((((((((((....))))).......((((.......)))).))))...((((.....))))................))))))))).)).. (-20.46 = -20.18 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:24 2006