Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,650,664 – 11,650,774 |
Length | 110 |
Max. P | 0.885427 |
Location | 11,650,664 – 11,650,774 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 87.69 |
Mean single sequence MFE | -34.03 |
Consensus MFE | -25.84 |
Energy contribution | -26.72 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.12 |
Mean z-score | -2.10 |
Structure conservation index | 0.76 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885427 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11650664 110 - 20766785 UAAGCUACGACUAUCGAU---------UAUCGGUGCAGUUGA-AAAUACAUUCUUGUGGCGACUAGGUGUUAAACCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAAC .......((.....))..---------..((((((((((...-.(((((.((((.(..((((((((((.....)))....)))..))))..))))).)))))....))))).)))))... ( -28.70) >DroSec_CAF1 23159 119 - 1 UAAGCUACGACUAUCGAUGAAACCAUCUAUCGGUGCAGUUGA-AGAUACAUUCUUGGGGCGACUAGGUGUUAAAGCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAAC ...............((((....))))..((((((((((.(.-((((((.((((.(((((((((((((......))))....)).))))))))))).))).))).)))))).)))))... ( -39.10) >DroSim_CAF1 24082 119 - 1 UAAGCUACGACUAUCGAUUAAACCAGCUAUCGGUGCAGUUGA-AGAUACAUUCUUGGGGCGACUAGGUGUUAAAGCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAAC ..((((..................)))).((((((((((.(.-((((((.((((.(((((((((((((......))))....)).))))))))))).))).))).)))))).)))))... ( -37.37) >DroEre_CAF1 23031 119 - 1 UAAGCUACGACUAUCGAUUAAACCAGCUAUCGGAGCAGGUGG-AGAUACAUUCUGUGAGCGACCAGGUGUAAAGCCCUUAUAGUUGCGCUCCAGAAAGUAUUCUACAUCGCAACCGCAAU ...((........(((((..........))))).((..((((-((.(((.(((((.(((((..(((.(((((.....))))).))))))))))))).)))))))))...))....))... ( -34.00) >DroYak_CAF1 23591 120 - 1 UAAGCUACGACUAUCGAUUAAAACAGCUAUCGGUGCAGGUGAAAGAUACAUUCUGUGGGUGACCAGGUGUUAAGCCCUUAUAGUUUCGCUCCAGAAAGUAUUCUACAUUGCAACCGACAU ..((((..................)))).(((((((((.((.(..((((.((((.(((....)))((.((.((((.......)))).)).)))))).))))..).)))))).)))))... ( -30.97) >consensus UAAGCUACGACUAUCGAUUAAACCAGCUAUCGGUGCAGUUGA_AGAUACAUUCUUGGGGCGACUAGGUGUUAAACCCUUAUAGGUUCGCUCCAGAAAGUAUUCUACAUUGCGACCGAAAC .......((.....)).............(((((((((.((...(((((.((((.((((((((((((........)))....))).)))))))))).)))))...)))))).)))))... (-25.84 = -26.72 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:20 2006