Locus 3469

Sequence ID 2R_DroMel_CAF1
Location 11,649,996 – 11,650,088
Length 92
Max. P 0.789849
window5661

overview

Window 1

Location 11,649,996 – 11,650,088
Length 92
Sequences 4
Columns 92
Reading direction forward
Mean pairwise identity 84.59
Mean single sequence MFE -20.36
Consensus MFE -17.13
Energy contribution -17.69
Covariance contribution 0.56
Combinations/Pair 1.10
Mean z-score -1.72
Structure conservation index 0.84
SVM decision value 0.58
SVM RNA-class probability 0.789849
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11649996 92 + 20766785
UGCCAGCCAAAAACUCACUCGAUUAUCUAACCCAAAAAAAAAAAAAAAAACGUUGGGGCGAUCGGCCCACCUUGGUGGCGUUAUAUUAAUUG
.((((.((((........((((((.((((((....................))))))..))))))......))))))))............. ( -17.89)
>DroSec_CAF1 22502 87 + 1
UGCCACCCAAAAACUCACUCGAUUAUCUAACCCAAAAAAA-----AAAAAAAACGGGGCGAUCGGCCCACCUUGGUGGCGUUAUAUUAAUUG
.((((((.......((....))..................-----..........((((.....)))).....))))))............. ( -18.40)
>DroEre_CAF1 22362 79 + 1
UGCCAGCCA---ACUUACCCGAUUAUCUAACCCCG----------AAAAACGUUGGGGCGAUCGGCCCACCUUGGUGGCGUUAUAUUAAUUG
.((((.(((---(.....((((((......(((((----------(......)))))).))))))......))))))))............. ( -24.00)
>DroYak_CAF1 22927 90 + 1
UGCCGUCCAA--ACCCACCCGAUUAUCUAACCCAAAAUAAAAAAAAAAAACGUUGGGGCGAUCGGCCCACCUUGGUGGCGUUAUAUUAAUUG
.((((.((((--......((((((.((((((....................))))))..))))))......))))))))............. ( -21.15)
>consensus
UGCCAGCCAA__ACUCACCCGAUUAUCUAACCCAAAAAAA_____AAAAACGUUGGGGCGAUCGGCCCACCUUGGUGGCGUUAUAUUAAUUG
.((((.((((........((((((.((((((....................))))))..))))))......))))))))............. (-17.13 = -17.69 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:19 2006