Locus 3466

Sequence ID 2R_DroMel_CAF1
Location 11,641,778 – 11,641,871
Length 93
Max. P 0.605191
window5657

overview

Window 7

Location 11,641,778 – 11,641,871
Length 93
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 91.05
Mean single sequence MFE -20.52
Consensus MFE -16.36
Energy contribution -15.88
Covariance contribution -0.48
Combinations/Pair 1.12
Mean z-score -1.45
Structure conservation index 0.80
SVM decision value 0.14
SVM RNA-class probability 0.605191
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11641778 93 + 20766785
------UUUACUGUAUGUGUAGUUGCAAUUAAUUUGCAAUUAUAAAUCACUGGCUAUUAGUUAUCAGUUGAUUGCCGCAGCGGCAAUUGGAAAUCGAUC
------...........(((((((((((.....))))))))))).(((.((((.((.....))))))(..(((((((...)))))))..).....))). ( -24.00)
>DroSec_CAF1 14144 93 + 1
------UUUACUGUAUGUGCACUUGCAAUUAAUUUGCAAUUAUAAAUCACUGGCUAUUAGUUAUCAGUUGAUUGCCUCAGCGGCAAUUGGAAAUCGAUC
------...........(((....)))((..((((.(((((...(((((((((.((.....)))))).)))))(((.....)))))))).))))..)). ( -18.20)
>DroSim_CAF1 14438 93 + 1
------UUUACUGUAUGUGCAUUUGCAAUUAAUUUGCAAUUAUAAAUCACUGGCUAUUAGUUAUCAGUUGAUUGCCUCAGCGGCAAUUGGAAAUCGAUC
------...........(((....)))((..((((.(((((...(((((((((.((.....)))))).)))))(((.....)))))))).))))..)). ( -18.20)
>DroEre_CAF1 14243 99 + 1
UUAUCUUGUACUGUAUGUGCACUUGCAAUUAAUUUGCAAUUAUAAAUCACUGGCUAUUACUUAUCAGUUAAUUGCUUCAGCGGCAAUUCGAAAUCGAUC
......(((((.....))))).((((((.....)))))).........(((((.((.....)))))))..((((((.....))))))(((....))).. ( -17.30)
>DroYak_CAF1 14446 99 + 1
UUAUAUGCCACUGUAUGUGCACUUGCAAUUAAUUUGCAAUUAUAAAUCACUGGCUAUUACUUAUCAGUUGAUUGCCUCAGCGGCAAUUCGAAAUCGAUC
.....((((.(((...(.((..((((((.....)))))).....(((((((((.((.....)))))).)))))))).))).))))..(((....))).. ( -24.90)
>consensus
______UUUACUGUAUGUGCACUUGCAAUUAAUUUGCAAUUAUAAAUCACUGGCUAUUAGUUAUCAGUUGAUUGCCUCAGCGGCAAUUGGAAAUCGAUC
........(((.....)))...((((((.....))))))......((((((((.((.....))))))).(((((((.....))))))).......))). (-16.36 = -15.88 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:16 2006