Locus 3462

Sequence ID 2R_DroMel_CAF1
Location 11,628,895 – 11,629,015
Length 120
Max. P 0.942658
window5649

overview

Window 9

Location 11,628,895 – 11,629,015
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.42
Mean single sequence MFE -21.58
Consensus MFE -10.61
Energy contribution -10.81
Covariance contribution 0.19
Combinations/Pair 1.07
Mean z-score -2.18
Structure conservation index 0.49
SVM decision value 1.33
SVM RNA-class probability 0.942658
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11628895 120 - 20766785
CUGGCCAUGGAGGCCACGUUGUCGUCGUUAUCGUGACGUACUUCCUCCUCCUCCUCCUCAAUAUCACUGAUUUCCACCUCGAUUUCCUCUUCGAUUUCGAUUUCUUCCUCGGAAUAUUCU
..((....(((((......(((((.((....))))))).....)))))....))............((((........((((..((......))..))))........))))........ ( -22.89)
>DroVir_CAF1 3280 96 - 1
CUGGCCGUGAUGGCCACAUUAUCAUCGCU------------------------UUCCUCCAAAUCGCUUAUCUCCACUUCGAUUUCCUCCUCGAUUUCGAUCUCCUCUUCGGAAUAUUCG
.(((((.....))))).............------------------------.......((((((.............))))))........(((((((........)))))))..... ( -14.72)
>DroPse_CAF1 312 105 - 1
CUGGCCGACAAUGCCACAUCACCAUCACCG---------------GCAUCCUCUUCUUCGAUGUCGCUGAUCUCCACUUCGAUUUCUUCCUCGAUUUCGAUUUCCUCCUCGGAAUAUUCU
.((((.......)))).......((((.((---------------(((((.........))))))).)))).......((((..((......))..)))).((((.....))))...... ( -22.70)
>DroEre_CAF1 1418 114 - 1
CUGGCCAUGGAGGCUACAUUGUCGUCGCUAUCGUGACGU------UCUUCCUCCUCCUCAAUGUCGCUGAUUUCCACCUCGAUCUCCUCUUCGAUUUCGAUUUCCUCCUCGGAGUAUUCU
....((..((((((.((((((.((((((....)))))).------.............)))))).)).((..((....((((........))))....))..))))))..))........ ( -27.36)
>DroAna_CAF1 2183 117 - 1
CUGGCCAUGGAUGCCACAUUAUCGUCGCUUUCGUU---CGCCGCCUCCUCGUUCUCCUCAAUGUCGCUGAUCUCCACCUCGAUCUCCUCCUCGAUUACGAUUUCCUCCUCGGAAUAUUCU
..(((.(((((.((.((......)).)).))))).---.)))......((((..((......(..(..((((........))))..)..)..))..)))).((((.....))))...... ( -19.10)
>DroPer_CAF1 312 105 - 1
CUGGCCGACAAUGCCACAUCACCAUCACCG---------------GCAUCCUCUUCUUCGAUGUCGCUGAUCUCCACUUCGAUUUCUUCCUCGAUUUCGAUUUCCUCCUCGGAAUAUUCU
.((((.......)))).......((((.((---------------(((((.........))))))).)))).......((((..((......))..)))).((((.....))))...... ( -22.70)
>consensus
CUGGCCAUGAAGGCCACAUUAUCAUCGCUA_______________UCAUCCUCCUCCUCAAUGUCGCUGAUCUCCACCUCGAUUUCCUCCUCGAUUUCGAUUUCCUCCUCGGAAUAUUCU
.((((.......))))..................................................((((........((((..((......))..))))........))))........ (-10.61 = -10.81 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:08 2006