| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,286,699 – 2,286,799 |
| Length | 100 |
| Max. P | 0.587537 |
| Location | 2,286,699 – 2,286,799 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 78.00 |
| Mean single sequence MFE | -21.62 |
| Consensus MFE | -10.83 |
| Energy contribution | -10.83 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.25 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.50 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.587537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2286699 100 + 20766785 ACCUUUCUUUUGGCCAACAUCGCAGCCGCAAGUCUCACUCACUCGCUUUUCU-GCUGAUUUAUUGCGGCUUUUGUUUUUUGACAAGUGUCAAAAAGAGUCU------------- ..((((.((((((((........((((((((...(((.......((......-)))))....)))))))).(((((....)))))).)))))))))))...------------- ( -23.71) >DroSec_CAF1 52712 90 + 1 ACCUUUCUUUUGGCCAACUUCG------CAAGUCUCA----CUCGCUUUCCU-GCUGAUUUAUUGCGGCUUUUGUUUUUUGACAAGCGUCAAAAAGAGUCU------------- ..((((.(((((((......((------(((...(((----...((......-)))))....)))))(((..((((....))))))))))))))))))...------------- ( -19.50) >DroSim_CAF1 53385 90 + 1 ACCUUUCUUUUGGCCAACUUCG------CAAGUCUCA----CUCGCUUUUCU-GCUGAUUUAUUGCGGCUUUUGUUUUUUGACAAGCGUCAAAAAGAGUCU------------- ..((((.(((((((......((------(((...(((----...((......-)))))....)))))(((..((((....))))))))))))))))))...------------- ( -19.50) >DroEre_CAF1 53122 94 + 1 ACCUUUCUUUUGGCCAACU-CGAAGCCGCAAGUCUCA----CUCGCU-UUCU-GCUGAUUUAUUGCGGCUUUUGUUUUUUGACAAGCGUCAAAAAGAGUCU------------- .((........))...(((-(((((((((((...(((----...((.-....-)))))....))))))))))...((((((((....))))))))))))..------------- ( -28.50) >DroYak_CAF1 48504 81 + 1 ACCUUUCUUUUGGCCAACU---------------UCA----CUCGCUUUUCU-GCUGAUUUAUUGCGGCUUUUCGUUUUUGACAAGCGUCAAAAAGAGUCU------------- ..((((.(((((((.....---------------...----..(((...((.-...))......)))((((.(((....))).)))))))))))))))...------------- ( -15.80) >DroPer_CAF1 54162 109 + 1 UUUCUUUUUGUGUCCAAAA-GCAGCCCGGAAAUUUCA----UUCGCUUUUCUUGUUGAUUUAUUGGAGCUUUUGUUUUUUGACAAGCGUCACAAAAAUACUUGGGCUUGCUCUG .....(((((....)))))-(((((((((........----...(((((...((......))..)))))...(((((((((((....)))).))))))).)))))).))).... ( -22.70) >consensus ACCUUUCUUUUGGCCAACU_CG______CAAGUCUCA____CUCGCUUUUCU_GCUGAUUUAUUGCGGCUUUUGUUUUUUGACAAGCGUCAAAAAGAGUCU_____________ ...........(((.......................................((((........)))).....(((((((((....))))))))).))).............. (-10.83 = -10.83 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:03 2006