Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,617,551 – 11,617,650 |
Length | 99 |
Max. P | 0.974198 |
Location | 11,617,551 – 11,617,650 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 98.79 |
Mean single sequence MFE | -30.66 |
Consensus MFE | -30.20 |
Energy contribution | -30.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.66 |
Structure conservation index | 0.98 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974198 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11617551 99 + 20766785 AAUAACAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAACGGAUGAACAUUGUUCAUCGUCAUUUUGCAU ......(((...((((((((.(((........))).)))))))).......)))...(..((((((....(((((((...))))))).))))))..).. ( -30.20) >DroSec_CAF1 15403 99 + 1 AAUAACAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAACGGAUGAACAUUGUUCAUCGUCAUUUUGCAU ......(((...((((((((.(((........))).)))))))).......)))...(..((((((....(((((((...))))))).))))))..).. ( -30.20) >DroSim_CAF1 15694 99 + 1 AAUAACAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAACGGAUGAACAUUGUUCAUCGUCAUUUUGCAU ......(((...((((((((.(((........))).)))))))).......)))...(..((((((....(((((((...))))))).))))))..).. ( -30.20) >DroEre_CAF1 15778 99 + 1 AAUAACAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAAUGGAUGAACAUUGUUCAUCGUCAUUUUGCAU ......(((...((((((((.(((........))).)))))))).......)))...(..((((((....(((((((...))))))).))))))..).. ( -30.20) >DroYak_CAF1 16756 99 + 1 UAUAGCAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAACGGAUGAACAUUGUUCAUCGUCAUUUUGCAU ..((((......((((((((.(((........))).)))))))).......))))..(..((((((....(((((((...))))))).))))))..).. ( -32.52) >consensus AAUAACAGCCCUGCGCUCGAAGGCGUUGGUUGGUCAUCGAGCGUUCAUCCCGCUACCGAGAAAUGAAACGGAUGAACAUUGUUCAUCGUCAUUUUGCAU ......(((...((((((((.(((........))).)))))))).......)))...(..((((((....(((((((...))))))).))))))..).. (-30.20 = -30.20 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:02 2006