Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,613,715 – 11,613,806 |
Length | 91 |
Max. P | 0.626391 |
Location | 11,613,715 – 11,613,806 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 84.06 |
Mean single sequence MFE | -25.08 |
Consensus MFE | -17.88 |
Energy contribution | -18.88 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.19 |
Mean z-score | -1.61 |
Structure conservation index | 0.71 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626391 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11613715 91 - 20766785 CCUGAACAGCCGGUAAGCCGCUUUGGCGUUGCCAGACCAUUGGGUUCGAAAUUUCGAACUUAGCUGCA-UGCUAUUUUACGUUAGCAUGUAA ......((((.((((((((.....))).))))).......(((((((((....)))))))))))))((-(((((........)))))))... ( -32.60) >DroSec_CAF1 11621 92 - 1 CCUGAACAGCCGGUAAGCCGCUUUAACGUUGCCAGAUCAAUGGGUUCGAAAUUUCGAACUCAGCUGCAAUGCCACUUUACAUAAACAUGUAA .......(((.((....)))))....((((((.((.....(((((((((....))))))))).)))))))).....((((((....)))))) ( -24.60) >DroSim_CAF1 11668 92 - 1 CCUGAACAGCCGGUAAGCCGCUUUGGCGUUGCCAGAUCAAUGGGUUCGAAAUUUCGAACAAAGCUGCAAUGACAUUUUACAUUAGCAUGUAA ......((((.((((((((.....))).)))))..........((((((....))))))...))))..........((((((....)))))) ( -23.60) >DroEre_CAF1 11859 90 - 1 CCUGAACGGCCGGUAAGUUUACUUGGCGUUGCCAGACCAAUGGGUUGG--CUUUCGAACUUAGCUUCAAGGCAAUUUUACAUUACAAUGAAA ..((((.((((((((((((.....))).))))).((((....))))))--))))))......(((....))).................... ( -19.50) >consensus CCUGAACAGCCGGUAAGCCGCUUUGGCGUUGCCAGACCAAUGGGUUCGAAAUUUCGAACUUAGCUGCAAUGCCAUUUUACAUUAGCAUGUAA ......((((.((((((((.....))).))))).......((((((((......))))))))))))..........((((((....)))))) (-17.88 = -18.88 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:01 2006