Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,611,300 – 11,611,397 |
Length | 97 |
Max. P | 0.670924 |
Location | 11,611,300 – 11,611,397 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 83.74 |
Mean single sequence MFE | -29.13 |
Consensus MFE | -20.79 |
Energy contribution | -19.93 |
Covariance contribution | -0.86 |
Combinations/Pair | 1.21 |
Mean z-score | -2.24 |
Structure conservation index | 0.71 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.670924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11611300 97 - 20766785 CCCGGUUUCCCUUCGCCACCAGUUAGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCCAACGAUGAGGGCGGUCCCGGU---- .((((..(((((((((.....((((((..((..((((((((.(((.....))).))))))))..))..)))))).....).)))))).))..)))).---- ( -33.00) >DroPse_CAF1 11403 90 - 1 -CC-GCUACUCCUCUCUCAUAUUUAGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGUUGGGCUAACGAUGAGGGCGGGU--------- -..-.....(((.(((((((..(((((((((..((((((((.(((.....))).))))))))..)).....)))))))..))))))).))).--------- ( -24.80) >DroSec_CAF1 9207 100 - 1 -CCGGUUUCCCUUCGCCAUUAGUUGGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCCAACGAUGAGGGCGGUCCCGGUUUCC -((((..(((((((((.....((..((..((..((((((((.(((.....))).))))))))..))..))..)).....).)))))).))..))))..... ( -32.60) >DroSim_CAF1 9259 100 - 1 -CCGGUUUCCCUUCGCCACCAGUUGGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCCAACGAUGAGGGCGGUCCCGGUUUCC -((((..(((((((((.....((..((..((..((((((((.(((.....))).))))))))..))..))..)).....).)))))).))..))))..... ( -32.60) >DroEre_CAF1 9380 89 - 1 ---------CCCUGGCCACCAGUUAGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCUAACGAUGAGGGCGGUC---GUUUCC ---------....((((.((.((((((..((..((((((((.(((.....))).))))))))..))..))))))(....).....)).))))---...... ( -25.90) >DroYak_CAF1 10457 89 - 1 ---------CCCUGGCCACCAGUUAGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCUAACGAUGAGGGCGGUC---GUUUCC ---------....((((.((.((((((..((..((((((((.(((.....))).))))))))..))..))))))(....).....)).))))---...... ( -25.90) >consensus _CC_GUUUCCCCUCGCCACCAGUUAGUUUUAUUUUGAUGCGUUUUUAAUCAGAUUGCGUCAAUUUGUUGCUGGCCCAACGAUGAGGGCGGUC___GUUUCC ..............(((......((((..((..((((((((.(((.....))).))))))))..))..))))((((........))))))).......... (-20.79 = -19.93 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:00 2006