Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,610,632 – 11,610,727 |
Length | 95 |
Max. P | 0.750460 |
Location | 11,610,632 – 11,610,727 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 79.01 |
Mean single sequence MFE | -25.05 |
Consensus MFE | -16.97 |
Energy contribution | -18.22 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.16 |
Mean z-score | -1.48 |
Structure conservation index | 0.68 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.750460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11610632 95 + 20766785 GCACUCCGGCCGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCACGGAGAAGCGCAAAGCAAAAAGAAUUGGUACUAAGAAAAACAA--G--GCGAC ((.(((((...((((((...((((((....))))))...)))))).)))))..((.....))...........................--.--))... ( -29.30) >DroPse_CAF1 10943 80 + 1 CUCCUUUGCC--------CCAUGUAUUUCUGUACUUU-ACGGGCCAUGAAGAAGC--AGUCCAAAAAGAGC---AACAAAAAAGUGUAA-----GGGAA .((((((((.--------...........(((.((((-..((((..((......)--)))))..)))).))---)((......))))))-----)))). ( -15.60) >DroSec_CAF1 8526 97 + 1 GUACUGCGGCCGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCACAGAGAAGCGAAAAGCAAAAAGAAUUGGUACUAAAGAAAACAA--GGGGGGAG (((((......((((((...((((((....))))))...))))))........((.....))..........)))))............--........ ( -23.70) >DroSim_CAF1 8590 99 + 1 GUACUCCGGCCGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCACAGAGAAGCGAAAAGCAAAAAGAUUUGGUACUAAACAAAACAAGAGGGGGGAG ...((((..((((((((...((((((....))))))...))))))........((.....)).....(.((((........)))).)....))..)))) ( -28.10) >DroEre_CAF1 8572 94 + 1 GUACUCUGGCUGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCAUGGAGAAGCGCAAAGCAAAAAGAAUAGCUGCCAAAGAAAACAA--G--GGGC- ...((.(((((((((((...((((((....))))))...))))))).......((.....)).............)))).)).......--.--....- ( -26.60) >DroYak_CAF1 9624 95 + 1 GUACUCCGGCUGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCAUGGAGAAGCGCAAAGCAAAAAGAAUAGCGACCAACGAAAACAA--G--GGGAG ...((((.(((((((((...((((((....))))))...))))))........((.....)).........)))..((...........--)--))))) ( -27.00) >consensus GUACUCCGGCCGGCCUGGCCAAGUAUUUCUGUACUUUAACGGGCCACGGAGAAGCGCAAAGCAAAAAGAAUUGGUACUAAAGAAAACAA__G__GGGAG ...(((((...((((((...((((((....))))))...)))))).)))))..((.....))..................................... (-16.97 = -18.22 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:59 2006