Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,609,821 – 11,609,920 |
Length | 99 |
Max. P | 0.655761 |
Location | 11,609,821 – 11,609,920 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 87.02 |
Mean single sequence MFE | -32.80 |
Consensus MFE | -23.81 |
Energy contribution | -23.88 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.05 |
Mean z-score | -1.65 |
Structure conservation index | 0.73 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.655761 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11609821 99 + 20766785 GGUGCCAGGGGAGCACCUACAGGUUGGGGGCAUUGCUCCACUCCCCAGUACUUUGCACCACACUGGCCAAAAAAUUG----------AAAUUGAAACUCUUUUAUGACC (((((..((((((.(((....)))..(((((...))))).))))))((....)))))))..................----------...................... ( -25.90) >DroSec_CAF1 7725 99 + 1 GGUGCCAGGGGAGCACCUACAGGUUGGGGGCAUUGCUCCACUCCCCAGUACUUUGCACCACACUGGCCAAAAAGUUG----------AAGUCGAACUUCUUUUAUGGCC (((((..((((((.(((....)))..(((((...))))).))))))((....))))))).....(((((.((((..(----------(((.....)))))))).))))) ( -37.10) >DroSim_CAF1 7828 99 + 1 GGUGCCAGGGGAGCACCUACAGGUUGGGGGCAUUGCUCCACUCCCCAGUACUUUGCACCACACUGGCCAAAAAGUUG----------AAGUCGAACUUCUUUUAUGGCC (((((..((((((.(((....)))..(((((...))))).))))))((....))))))).....(((((.((((..(----------(((.....)))))))).))))) ( -37.10) >DroEre_CAF1 7863 105 + 1 GGAGCCAAGGGAGCACCUACUGGCUGGGGGCAUUGCUCCUCUCCCCAGUACUUUGCACCACACUGGCCAAAAAAUCGAUGUUUCUAUAGGUCGAACUUCUUUUAU---- .(.((((..((.(((..((((((..((((((...))))))....))))))...))).))....)))))......(((((.(......).)))))...........---- ( -31.10) >consensus GGUGCCAGGGGAGCACCUACAGGUUGGGGGCAUUGCUCCACUCCCCAGUACUUUGCACCACACUGGCCAAAAAAUUG__________AAGUCGAACUUCUUUUAUGGCC .(.(((((.((.(((((....))(((((((...........))))))).....))).))...))))))......................................... (-23.81 = -23.88 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:57 2006