Locus 3452

Sequence ID 2R_DroMel_CAF1
Location 11,607,300 – 11,607,392
Length 92
Max. P 0.979710
window5636

overview

Window 6

Location 11,607,300 – 11,607,392
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 95.87
Mean single sequence MFE -23.18
Consensus MFE -21.88
Energy contribution -21.96
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -1.57
Structure conservation index 0.94
SVM decision value 1.84
SVM RNA-class probability 0.979710
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11607300 92 - 20766785
CGGAUGAGUAAUGCGUCUGGGUGCACGGAAAAUGAAAAUAAAUUUGUUUAUGCGGUCGCUGCAUUCUGUGAUGAAAGAAUUUCUUUGUUGCA
.(((((......(((.(((.(((.(((((..((....))...))))).))).))).)))..))))).(..((.((((.....))))))..). ( -21.40)
>DroSec_CAF1 5298 92 - 1
CGGAUGAGUAAUGCGUCUGGGUGCAGGGAGAAUGAAAAUAAAUUUGUUUAUGCGGUCGCUGCAUUCUGUGAUGAAAGAAUUUCUUUGUUGCA
.......(((((.((((.((((((((.((...((...(((((....))))).)).)).))))))))...))))((((.....))))))))). ( -23.30)
>DroSim_CAF1 5366 92 - 1
CGGAUGAGUAAUGCGUCUGGGUGCAGGGAGAAUGAAAAUAAAUUUGUUUAUGCGGUCGCUGCAUUUUGUGAUGAAAGAAUUUCUUUGUUGCA
(((((((....).))))))(((((((.((...((...(((((....))))).)).)).))))))).((..((.((((.....))))))..)) ( -22.40)
>DroEre_CAF1 5336 92 - 1
UGGAUGAGUAAUGCGUCUGGGUGCAGGGAAAAUGAAAAUAAAUUUGUUUAUGCGGUCGCUGCAUUCUGUGAUGAAAGAAUUUCUUUGUUGCA
.......(((((.((((.((((((((.((...((...(((((....))))).)).)).))))))))...))))((((.....))))))))). ( -24.40)
>DroYak_CAF1 6114 91 - 1
UGGAUGAGUAAUACGUCUGGGUGCAGGGG-UAUGAAAAUAAAUUUGUUUUUGCGGUCGCUGCAUUCUGUGAUGAAAGAAUUUCUUUGUUGCA
.......(((((.((((.((((((((((.-(..(((((((....)))))))..).)).))))))))...))))((((.....))))))))). ( -24.40)
>consensus
CGGAUGAGUAAUGCGUCUGGGUGCAGGGAAAAUGAAAAUAAAUUUGUUUAUGCGGUCGCUGCAUUCUGUGAUGAAAGAAUUUCUUUGUUGCA
.......(((((.((((.((((((((.((...((...(((((....))))).)).)).))))))))...))))((((.....))))))))). (-21.88 = -21.96 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:56 2006