Locus 3451

Sequence ID 2R_DroMel_CAF1
Location 11,606,755 – 11,606,855
Length 100
Max. P 0.615209
window5635

overview

Window 5

Location 11,606,755 – 11,606,855
Length 100
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 79.51
Mean single sequence MFE -22.02
Consensus MFE -13.71
Energy contribution -14.23
Covariance contribution 0.52
Combinations/Pair 1.30
Mean z-score -1.72
Structure conservation index 0.62
SVM decision value 0.17
SVM RNA-class probability 0.615209
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11606755 100 - 20766785
AACGAACCCAAAAAUCCAAUCGAUAUGCAUUAAUAACGUAUGUUAUCUAAAUCAUGAAAUAU-----CGUGUCUUGGAGUGGAUUUAUUCUCUUGCAACUAAAGC---------------
...........(((((((...(((((((.........))))))).(((((..(((((....)-----))))..))))).)))))))...................--------------- ( -19.00)
>DroSec_CAF1 4773 105 - 1
AACGAACCCAAAAAUCCACUCGAUGCGCAUUAAUAACGCAUGUUAUCUAUAUCAUGAAAUAUAGUAUCGUACCUUUGAGUGGAUUUAUUUUCUUGAAACUAAAGC---------------
...........((((((((((((.(((.........)))(((.((.((((((......)))))))).)))....))))))))))))...................--------------- ( -22.20)
>DroSim_CAF1 4835 105 - 1
AACGAACCCAAAAAUCCACUCGAUGCGCAUUAAUAACGCAUGUUAUCUAUAUCAUGAAAUAUAGUAACGUGCCUUGGAGUGGAUUUAUUUUCUUGAAACUAAAGC---------------
...........(((((((((((((....)))..(((.((((((((.((((((......)))))))))))))).)))))))))))))...................--------------- ( -27.70)
>DroEre_CAF1 4770 120 - 1
GACGAACCCAAAAAUCAACUCGAUAUGCAUUAAUAACGCAUGUUAUCUAUAUCAUGAAACAUAGGAUCGUGUCUUUGAGUAGAUUUAUUUCCUUGAAAUUAGAGCUGUACUAAACGAAAG
..((.......(((((.(((((((((((.........)))))))........(((((..(...)..))))).....)))).)))))............((((.......)))).)).... ( -17.70)
>DroYak_CAF1 5549 119 - 1
AACAAACCCACGAAUUCAGUGGAAAUUCAUUAAUAACGCAUGUUAUCUAUAUCAUGAAAUAUAGAAUCGUGUCUUUGAGUGGAUUUAUUUCCUUGAAAUUGAAACUGAACUA-ACGAAAG
..........(((.(((((.(((((((((((...((.(((((...(((((((......)))))))..))))).))..)))))))....))))))))).)))...........-.(....) ( -23.50)
>consensus
AACGAACCCAAAAAUCCACUCGAUAUGCAUUAAUAACGCAUGUUAUCUAUAUCAUGAAAUAUAGUAUCGUGUCUUUGAGUGGAUUUAUUUUCUUGAAACUAAAGC_______________
...........((((((((((((((((...........((((..........))))...........))))))...)))))))))).................................. (-13.71 = -14.23 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:54 2006