Locus 3449

Sequence ID 2R_DroMel_CAF1
Location 11,601,439 – 11,601,534
Length 95
Max. P 0.864018
window5632 window5633

overview

Window 2

Location 11,601,439 – 11,601,534
Length 95
Sequences 3
Columns 96
Reading direction forward
Mean pairwise identity 94.43
Mean single sequence MFE -21.54
Consensus MFE -19.34
Energy contribution -19.68
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -1.88
Structure conservation index 0.90
SVM decision value 0.26
SVM RNA-class probability 0.658799
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11601439 95 + 20766785
AGUCUAACAUUUAUGCUCUCGUACUUGCCAACUCCACUAAAAUCUUGUACGGCAGUUACGUAAAUGUCCUGUCAUUUUGUGGAGUUUGGCUUUU-U
..........................(((((((((((.(((((.......(((((..(((....))).)))))))))))))))).)))))....-. ( -21.91)
>DroSec_CAF1 7757 96 + 1
AGUCUAACAUUUAUGCUCUCGCACUUGCCAACUCCACUAAAAUCUUGUACGGCAGUUACGUAAAUGUCCUGUCAUUUUGUGGAGUUUGGCUUUUUU
.............(((....)))...(((((((((((.(((((.......(((((..(((....))).)))))))))))))))).)))))...... ( -23.51)
>DroEre_CAF1 10322 92 + 1
AG-CUAACAUUUAUGUUCUCGUACUUGCCAACUCCACUAAAAUCUUGCACGGCAGUUACGUAAAUGUCCUGUCAUUUUGUGGAGUUUGACUUU---
..-....((..((((....))))..))(.((((((((.(((((...(((.((((..........)))).))).))))))))))))).).....--- ( -19.20)
>consensus
AGUCUAACAUUUAUGCUCUCGUACUUGCCAACUCCACUAAAAUCUUGUACGGCAGUUACGUAAAUGUCCUGUCAUUUUGUGGAGUUUGGCUUUU_U
..........................(((((((((((.(((((.......(((((..(((....))).)))))))))))))))).)))))...... (-19.34 = -19.68 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 3

Location 11,601,439 – 11,601,534
Length 95
Sequences 3
Columns 96
Reading direction reverse
Mean pairwise identity 94.43
Mean single sequence MFE -22.87
Consensus MFE -20.76
Energy contribution -20.10
Covariance contribution -0.66
Combinations/Pair 1.13
Mean z-score -2.23
Structure conservation index 0.91
SVM decision value 0.84
SVM RNA-class probability 0.864018
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11601439 95 - 20766785
A-AAAAGCCAAACUCCACAAAAUGACAGGACAUUUACGUAACUGCCGUACAAGAUUUUAGUGGAGUUGGCAAGUACGAGAGCAUAAAUGUUAGACU
.-....(((((.((((((.(((((......)))))(((.......)))...........))))))))))).(((.(...((((....)))).)))) ( -22.10)
>DroSec_CAF1 7757 96 - 1
AAAAAAGCCAAACUCCACAAAAUGACAGGACAUUUACGUAACUGCCGUACAAGAUUUUAGUGGAGUUGGCAAGUGCGAGAGCAUAAAUGUUAGACU
......(((((.((((((.(((((......)))))(((.......)))...........)))))))))))..((((....))))............ ( -26.70)
>DroEre_CAF1 10322 92 - 1
---AAAGUCAAACUCCACAAAAUGACAGGACAUUUACGUAACUGCCGUGCAAGAUUUUAGUGGAGUUGGCAAGUACGAGAACAUAAAUGUUAG-CU
---...(((((.((((((.(((((......))))).......(((...)))........)))))))))))......(..((((....))))..-). ( -19.80)
>consensus
A_AAAAGCCAAACUCCACAAAAUGACAGGACAUUUACGUAACUGCCGUACAAGAUUUUAGUGGAGUUGGCAAGUACGAGAGCAUAAAUGUUAGACU
......(((((.((((((.(((((......)))))..(((.......))).........))))))))))).........((((....))))..... (-20.76 = -20.10 +  -0.66)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:52 2006