Locus 3447

Sequence ID 2R_DroMel_CAF1
Location 11,599,729 – 11,599,849
Length 120
Max. P 0.507015
window5629

overview

Window 9

Location 11,599,729 – 11,599,849
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 78.39
Mean single sequence MFE -38.72
Consensus MFE -19.78
Energy contribution -20.62
Covariance contribution 0.84
Combinations/Pair 1.42
Mean z-score -1.84
Structure conservation index 0.51
SVM decision value -0.05
SVM RNA-class probability 0.507015
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11599729 120 - 20766785
UUAGGACCAUUAACCACGAGAUCAGUGUUUUUGUACGGAUCAACGAGAAGCCGGGUCACAACAUUGAUUGGCAGUUGAAGCUCAUUAAUGCGGUGGCCAGAACCUUGGAUGACUCCACCA
...(((.((((........((((.(((......))).))))..((((......((((((..(((((((.(((.......))).)))))))..)))))).....))))))))..))).... ( -34.50)
>DroVir_CAF1 39526 120 - 1
UGCGCACCAUCAAUCAUGAGAUCAGCAUUGCGGUGCGCAUCAAUGAGAAGCACGGCCACAACAUUGACUGGCAGCUGGAGCUUAUAAAGGCUGUUGCGCACACGCUGGAGGAUGGCAGCA
.((...(((((..(((((....)).....((((((((((.(.......(((...((((..........)))).)))..(((((....)))))).))))))).))))))..)))))..)). ( -39.00)
>DroPse_CAF1 24174 120 - 1
UGCGGACCAUCAACCACGAAAUCAGCAUUCUCGUGAAGAUCAACGAGAAGCACGGCCAUAACAUCGACUGGCAACUGAAGCUGAUCAAUGCCUUGGCUCGAACACUGGAUGAUGACAGCA
.((....(((((.(((........((.(((((((........))))))))).((((((...(((.((..(((.......)))..)).)))...)))).)).....))).)))))...)). ( -37.70)
>DroMoj_CAF1 39373 120 - 1
UGCGCACCAUCAAUCACGAGAUCAGCAUCGCUGUGCGCAUCAAUGAGAAGCAUGGCAACAACAUUGACUGGCAGCUGAAGCUGAUCAGGGCUGUUGCCCACACGCUGGAGGAUGGCGGCA
.((.(.(((((..(((((.(((((((.(((((((..((.((.....)).)).((....))..........))))).)).))))))).((((....))))...)).)))..))))).))). ( -48.60)
>DroAna_CAF1 20546 120 - 1
UUAGGACCAUCAACCACGAGAUUAGUAUUUCCGUGCGGAUCAACGAAAUACAUGGCCAUAACAUCAACUGGCAGUUGAAGCUGAUCAAUGCCGUGGCUAGGACGUUGGACGAUGCCACCA
...((..((((..(((((......(((((((.((........))))))))).(((((((..........((((.((((......)))))))))))))))...)).)))..))))...)). ( -33.30)
>DroPer_CAF1 25481 120 - 1
UGCGGACCAUCAACCACGAGAUCAGCAUUCUCGUGAAGAUCAACGAGAAGCACGGCCACAACAUCGACUGGCAACUGAAGCUGAUCAAUGCCUUGGCUCGAACACUGGAUGAUGACAGCA
.((....(((((.(((((((((((((.(((((((........))))))).....((((..........)))).......)))))))...((....))))).....))).)))))...)). ( -39.20)
>consensus
UGCGGACCAUCAACCACGAGAUCAGCAUUCCCGUGCGGAUCAACGAGAAGCACGGCCACAACAUCGACUGGCAGCUGAAGCUGAUCAAUGCCGUGGCUCGAACGCUGGAUGAUGACAGCA
...((..((((..(((...((((.((((....)))).))))............((((((..(((.((..(((.......)))..)).)))..)))))).......)))..))))...)). (-19.78 = -20.62 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:49 2006