Locus 3445

Sequence ID 2R_DroMel_CAF1
Location 11,598,138 – 11,598,243
Length 105
Max. P 0.617459
window5627

overview

Window 7

Location 11,598,138 – 11,598,243
Length 105
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.60
Mean single sequence MFE -46.30
Consensus MFE -32.20
Energy contribution -33.23
Covariance contribution 1.03
Combinations/Pair 1.24
Mean z-score -1.36
Structure conservation index 0.70
SVM decision value 0.17
SVM RNA-class probability 0.617459
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11598138 105 + 20766785
---------------GGCGACACAUAUGGCGGUGGUUUGCGGUAGGAGGGCGUGGCUGGCGACUUGCCACGCACUUCCCGGCCGCCCACAACCACCGAUGGUGGUGGCACAUAAUCGUCC
---------------(((((....((((((.((((...(((((.((((((((((((.(....)..))))))).)))))..))))))))).((((((...)))))).)).)))).))))). ( -54.40)
>DroSim_CAF1 2 108 + 1
------------UAUGGCGACACAUAUGGCGGUGGUUUGCGGUAGGAGGGCGUGGCUGGCGACUUGCCACGCACUUCCCGGCCGCCCACGACCACCGAUGGUGGUGGCACAUAAUCGUCC
------------((((((.((.(((....((((((((.(((((.((((((((((((.(....)..))))))).)))))..)))))....))))))))...))))).)).))))....... ( -56.50)
>DroEre_CAF1 7044 114 + 1
CUG------AUUUAUGGCGACACAUAUGGCGGUGGCUUGCGGUAGGAGGGCGUGGCUGGCGACUUACCACGCACUUCCCGGCCGCCCACAACCACCGAUGGAGGGGGCACGUAAUCGUCC
..(------(((.(((((..(.(((.(((..((((...(((((.(((((((((((..(....)...)))))).)))))..)))))))))..)))...)))...)..)).))))))).... ( -47.60)
>DroWil_CAF1 2 108 + 1
------------UAUGGUGAAACAUAUGGUGGAGGCUUGCGAUAUGAUGGUGUCGCUGGAGAUUUACCGCGCGCUUCACGUCCUCCUAGAACAACAGCAGGCGGGGGAACAUACUCAUCC
------------...(((((....((((((((((((..(((((((....))))))).((.......))..)).)))))).((((((................)))))).)))).))))). ( -31.49)
>DroYak_CAF1 7793 120 + 1
CUGACACUCAUUUAUGGCGACACAUAUGGCGGUGGUUUGCGGUAAGAGGGCGUGGCUGGCGACUUUCCACGCACUUCCCGGCCGCCCACAACCACCGAAGGAGGUGGCACGUAAUCGUCC
..(((......(((((((.((.....(..((((((((.(((((..((((((((((..(....)...)))))).))))...)))))....))))))))..)...)).)).)))))..))). ( -47.50)
>DroAna_CAF1 18964 114 + 1
CUG------ACUUAUGGCGACACAUAUGGCGGAGGCUUGCGGUAGGAGGGUGUGGCAGGUGACUUCCCUCGCACCUCCCGUCCGCCCACAACAACGGCCGGCGGUGGCACAUACUCAUCC
.((------(..((((((.((.....((((.(..(...((((..((((((((.((.((....)).))..))).)))))...))))......)..).))))...)).)).)))).)))... ( -40.30)
>consensus
____________UAUGGCGACACAUAUGGCGGUGGCUUGCGGUAGGAGGGCGUGGCUGGCGACUUACCACGCACUUCCCGGCCGCCCACAACCACCGAUGGAGGUGGCACAUAAUCGUCC
...............(((((.......((((((.(.........(((((((((((..(....)...)))))).)))))).)))))).....(((((......))))).......))))). (-32.20 = -33.23 +   1.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:47 2006