| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,591,773 – 11,591,889 |
| Length | 116 |
| Max. P | 0.558227 |
| Location | 11,591,773 – 11,591,889 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 90.40 |
| Mean single sequence MFE | -51.17 |
| Consensus MFE | -39.53 |
| Energy contribution | -41.42 |
| Covariance contribution | 1.89 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.77 |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.558227 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11591773 116 - 20766785 UAUGGAGCCAC----GGGGUUUGCGACUUGGCCAGACUGGCUCGGCCCAAGAGGUUUACGGUCAGGGAGUGGAGGGAGUUCCCUCCGUUUCAGGUUGCCAUUGCCAUUGAAGCGGCAACA ....(((((..----..)))))(((((((((((.(((((....((((.....))))..))))).))....((((((....))))))...)))))))))..(((((........))))).. ( -44.50) >DroSec_CAF1 25320 114 - 1 UAUGGAGCCAGGCCAGGGGUUUUCGACUGGGCCAGACUGGCUCGGCCCAAGAGGUUUCCGGUCAGGGAGCGGAGGGAGUUCCCUCGGCUUCAGGUUGC------CAUUGAAGCGGCAACA ..(((((((.((((.((((.((((...((((((((.....)).)))))).)))).))))))))(((((((.......))))))).))))))).(((((------(........)))))). ( -55.70) >DroSim_CAF1 28598 114 - 1 UAUGGAGCCAGGCCAGGGGUUUUCGACUGGGCCAGACUGGCUCGGCCCAAGAGGUUUCCGGUCAGGGAGCGGAGGGAGUUCCCUCGGUUUCAGGUUGC------CAUUGAAGCGGCAACA ..(((((((.((((.((((.((((...((((((((.....)).)))))).)))).))))))))(((((((.......))))))).))))))).(((((------(........)))))). ( -53.30) >consensus UAUGGAGCCAGGCCAGGGGUUUUCGACUGGGCCAGACUGGCUCGGCCCAAGAGGUUUCCGGUCAGGGAGCGGAGGGAGUUCCCUCGGUUUCAGGUUGC______CAUUGAAGCGGCAACA ..(((.(((.((((((.(((((......)))))...)))))).))))))....((((((.....)))))).(((((....))))).(((((((.............)))))))(....). (-39.53 = -41.42 + 1.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:41 2006