Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,591,015 – 11,591,128 |
Length | 113 |
Max. P | 0.694871 |
Location | 11,591,015 – 11,591,128 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 93.80 |
Mean single sequence MFE | -32.13 |
Consensus MFE | -31.37 |
Energy contribution | -31.37 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.53 |
Structure conservation index | 0.98 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.694871 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11591015 113 + 20766785 GCUGGCGCCAACGAUGACUGCGGCAUGUCA---GAGGAUAACAGAAACAUGUCAUCCACACACACA--CAC--UAAGACACACCCAGUGGGUCACAUCCCGACACCGCCAUCGAGGUGAA .....((((..(((((...((((..((((.---..((((.(((......))).)))).........--...--...(((.(((...))).))).......))))))))))))).)))).. ( -32.40) >DroSec_CAF1 24564 120 + 1 GCUGGCGCCAACGAUGACUGCGGCAUGUCAGCAGCGGAGAACAGAAACAUGUCAUCCACACACACACACACAAUUACACACACCCAGUGGGUCACAUCCCGACACCGCCAUCGAGGUGAA .....((((..(((((...((((..((((....(.(((..(((......)))..))).).............................(((......)))))))))))))))).)))).. ( -32.00) >DroSim_CAF1 27831 115 + 1 GCUGGCGCCAACGAUGACUGCGGCAUGUCA---GCGGAGAACAGAAACAUGUCAUCCACACACACACACAC--UAACACACACCCAGUGGGUCACAUCCCGACACCGCCAUCGAGGUGAA .....((((..(((((...((((..((((.---(.(((..(((......)))..))).)............--...............(((......)))))))))))))))).)))).. ( -32.00) >consensus GCUGGCGCCAACGAUGACUGCGGCAUGUCA___GCGGAGAACAGAAACAUGUCAUCCACACACACACACAC__UAACACACACCCAGUGGGUCACAUCCCGACACCGCCAUCGAGGUGAA .....((((..(((((...((((..((((......(((..(((......)))..)))...............................(((......)))))))))))))))).)))).. (-31.37 = -31.37 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:40 2006