| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 2,262,545 – 2,262,642 |
| Length | 97 |
| Max. P | 0.582632 |
| Location | 2,262,545 – 2,262,642 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 83.51 |
| Mean single sequence MFE | -12.20 |
| Consensus MFE | -8.44 |
| Energy contribution | -9.44 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.582632 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2262545 97 - 20766785 CUAUAUUUUUCCAGUCAAAUCCCUCUUAAAUCAGUGACUGUUUCAAAAAGUUCCUUGCAUUAAAGUCAACUGAUACGAAUGCUUAUUUGCAUCCAUA .............................((((((((((....(((........)))......)))).))))))..(.((((......)))).)... ( -14.30) >DroSec_CAF1 28903 85 - 1 -----------CAGACAAAUCCCUCUUAAAUCAGUGACUUUUUAAAUAACUUCAUUGCAUAAAAGUCAACUGAUACGAAUGCUUAUUUCCAUCU-CA -----------..................(((((((((((((..(((......)))....))))))).))))))....................-.. ( -12.40) >DroSim_CAF1 29521 85 - 1 -----------CAGACAAAUCCCUCUUAAAGCAGUGACUUUUUAAAUAACUUCAUUGCAUAAAAGUCAACUGAUACGAAUGCUUAUUUCCAUCU-CA -----------.................(((((.((((((((..(((......)))....))))))))...........)))))..........-.. ( -9.90) >consensus ___________CAGACAAAUCCCUCUUAAAUCAGUGACUUUUUAAAUAACUUCAUUGCAUAAAAGUCAACUGAUACGAAUGCUUAUUUCCAUCU_CA .............................(((((((((((((..................))))))).))))))....................... ( -8.44 = -9.44 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:01 2006