| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 11,588,681 – 11,588,782 |
| Length | 101 |
| Max. P | 0.979908 |
| Location | 11,588,681 – 11,588,782 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 79.05 |
| Mean single sequence MFE | -37.23 |
| Consensus MFE | -24.49 |
| Energy contribution | -25.82 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.66 |
| SVM decision value | 1.85 |
| SVM RNA-class probability | 0.979908 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11588681 101 + 20766785 UUUUGGGUUAUACCU-AACACUUUUUUCCAGUGUCCCUGCUGGCGUGUCCUGGUCGAUUUGAUAUGCAGAUGGUGGCAUG------GGCAUGCCGUUGUGACUCCUGU ....((((((((.(.-.(((((.......))))).......(((((((((..(((((((((.....)))))..))))..)------))))))))).)))))))).... ( -31.50) >DroEre_CAF1 22962 99 + 1 UUCUGGGAAUUGGCA-AGCA-UUUUUUCCAGUGUCGCAGCUGGCGCGUCCCGGUCGAUUUGAUAUGCAGAUGG-------GGCAUGGGCAUGCCGUUGUGACUCCUGU ..(((((((.((...-..))-...))))))).((((((((.((((.((((.(.((.(((((.....))))).)-------).)..)))).))))))))))))...... ( -37.00) >DroYak_CAF1 23015 100 + 1 UUCUGGGUAUUUGCGCAACU-UUUUGUGCAGUGUCGCAGCUGGCGUGUCCCUAUCGAUUUGAUAUGCAGAUGG-------GGCAUGGGCAUGCCGUUGUGACUCCUGU ....(((...((((((((..-..)))))))).((((((((.(((((((((...((.(((((.....))))).)-------)....))))))))))))))))).))).. ( -43.20) >consensus UUCUGGGUAUUAGCA_AACA_UUUUUUCCAGUGUCGCAGCUGGCGUGUCCCGGUCGAUUUGAUAUGCAGAUGG_______GGCAUGGGCAUGCCGUUGUGACUCCUGU ............................(((.((((((((.(((((((((....(.(((((.....))))).)............)))))))))))))))))..))). (-24.49 = -25.82 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:29 2006