Locus 3430

Sequence ID 2R_DroMel_CAF1
Location 11,584,808 – 11,584,902
Length 94
Max. P 0.614148
window5598

overview

Window 8

Location 11,584,808 – 11,584,902
Length 94
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 79.70
Mean single sequence MFE -21.43
Consensus MFE -14.74
Energy contribution -14.46
Covariance contribution -0.28
Combinations/Pair 1.22
Mean z-score -1.58
Structure conservation index 0.69
SVM decision value 0.16
SVM RNA-class probability 0.614148
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 11584808 94 + 20766785
AAGGUUUCGGUGCAAUUCAAUUUGCAGCUUGAUUUGUUUGGCAUUUUUGGGUGCUAACCC-----------UACUC---------UUUUCCUUCCGCC-----CAU-UUGUGUCAUAAAU
.(((((..(.(((((......))))).)..)))))...((((((...((((((.......-----------.....---------.........))))-----)).-..))))))..... ( -22.20)
>DroSec_CAF1 18409 94 + 1
AAGGUUUCGGUGCAAUUCAAUUUGCAGCUUGAUUUGUUUGGCAUUUUUGUGUGCUAGCUC-----------CACUC---------UUUUCCUUCCACC-----CAU-UUGUGUCAUAAAU
.(((((..(.(((((......))))).)..)))))...((((((...((.(((..((...-----------.....---------.....))..))).-----)).-..))))))..... ( -17.12)
>DroSim_CAF1 21235 95 + 1
AAGGUCUCGGUGCAAUUCAAUUUGCAGCUUGAUUUGUUUGGCAUUUUUGGGUGCUAGCUC-----------CACUC---------UUUUCCUUCCGCC-----CAUUUUGUGUCAUAAAU
.(((((..(.(((((......))))).)..)))))...((((((...((((((..((...-----------.....---------.....))..))))-----))....))))))..... ( -24.92)
>DroEre_CAF1 19306 89 + 1
AAGGUUUCGGUGCAAUUCAAUUUGCAGCUUGAUUUGUUUGGCAUUUUUGGGUGCC------------------------------UUUUCCUUCCGCCCCCUUCAU-CUGUGUCAUAAAU
.(((((..(.(((((......))))).)..)))))...((((((....(((.((.------------------------------..........)).))).....-..))))))..... ( -18.60)
>DroYak_CAF1 19195 118 + 1
AAGGUUUCGGUGCAAUUCAAUUUGCAGCUUGAUUUGUUUGGCAUUUUUGGGUGUCAGCUUACUCUGACUUUGACUCUUUUCCUUUUUAUCCUUACAC-GCCUUCAU-CUGUGCCAUAAAU
.(((((..(.(((((......))))).)..)))))...((((((....(((((((((......)))))...((......))................-))))....-..))))))..... ( -24.30)
>consensus
AAGGUUUCGGUGCAAUUCAAUUUGCAGCUUGAUUUGUUUGGCAUUUUUGGGUGCUAGCUC___________CACUC_________UUUUCCUUCCGCC_____CAU_UUGUGUCAUAAAU
.(((((..(.(((((......))))).)..)))))..(((((((......)))))))............................................................... (-14.74 = -14.46 +  -0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:19 2006