Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,257,749 – 2,257,850 |
Length | 101 |
Max. P | 0.527791 |
Location | 2,257,749 – 2,257,850 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.72 |
Mean single sequence MFE | -17.75 |
Consensus MFE | -12.32 |
Energy contribution | -12.27 |
Covariance contribution | -0.06 |
Combinations/Pair | 1.12 |
Mean z-score | -1.08 |
Structure conservation index | 0.69 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.527791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2257749 101 + 20766785 --UACUUACCUUCUAGA-GCGACCUGCACAAUCACAAAUCAU--GUUUAGGCAAAUUGUGCAAUGCAAUGAAU-CGCAUGAAAGUUCAUAGAACUUUAAGCCUAAAA --..((((..(((((((-((....((((((((..........--..........))))))))((((.......-.))))....)))).)))))...))))....... ( -19.55) >DroPse_CAF1 25921 98 + 1 ACU----ACCUUUUAGAAGCGACCUGCACAAUCACAAAUCGUCAGUUAACUGAAAUUGUGUAAU-----GAAUCCGCACCGAAGUUCAUAGAACUUGUAGCAUAGAU .((----((.........(((.....((....(((((....((((....))))..)))))...)-----)....)))....((((((...))))))))))....... ( -18.30) >DroEre_CAF1 24621 97 + 1 --U----ACCUUCUAGA-GCGACCUGCACAAUCACAAAUCAU--GUUAAUGCAUAUUGUGCAAUGAAGUGAAU-AGCAUGAAAGUUCAUAGAACUUUAAGCAUAAAA --.----.(((((.((.-.....))(((((((........((--((....)))))))))))...)))).)...-.((...(((((((...)))))))..))...... ( -17.50) >DroYak_CAF1 20788 97 + 1 --U----ACCUUCUAGA-GGGACCUGCACAAUCACAAAUCAU--UUUAAUGCAAAUUGUGCAAUGGAAUAAUU-CGCAUGAAAGUUCAUAGAACUUUAGGCAUAAAA --.----.((((....)-))).((((((((((..........--..........))))))))..)).......-.((...(((((((...)))))))..))...... ( -19.95) >DroAna_CAF1 36090 93 + 1 ---ACUUACCUUCUAGA-GCGACCUGCACAAUCACAGAUCAU--GUUAACUAUAAUUGUGUAA-----CGAAU-CGUAUUAAAGUUCAUAGAACUUUUAGCAUA--A ---.......(((((((-((....((((((((.(.((.....--.....)).).))))))))(-----((...-)))......)))).)))))...........--. ( -12.90) >DroPer_CAF1 26546 98 + 1 ACU----ACCUUUUAGAAGCGACCUGCACAAUCACAAAUCGUCAGUUAACUGAAAUUGUGUAAU-----GAAUCCGCACCGAAGUUCAUAGAACUUGUAGCAUAGAU .((----((.........(((.....((....(((((....((((....))))..)))))...)-----)....)))....((((((...))))))))))....... ( -18.30) >consensus __U____ACCUUCUAGA_GCGACCUGCACAAUCACAAAUCAU__GUUAACGCAAAUUGUGCAAU____UGAAU_CGCAUGAAAGUUCAUAGAACUUUAAGCAUAAAA ........................((((((((......................)))))))).............((...(((((((...)))))))..))...... (-12.32 = -12.27 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:36:00 2006