Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,584,063 – 11,584,173 |
Length | 110 |
Max. P | 0.884276 |
Location | 11,584,063 – 11,584,173 |
---|---|
Length | 110 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.21 |
Mean single sequence MFE | -29.60 |
Consensus MFE | -25.47 |
Energy contribution | -25.52 |
Covariance contribution | 0.05 |
Combinations/Pair | 1.00 |
Mean z-score | -1.69 |
Structure conservation index | 0.86 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884276 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11584063 110 + 20766785 ------AUGUGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUG---CUGCACUUCUGCC-GUUGGUCCU ------.......(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).)))))............(((.(---(.(((....))).-)).)))... ( -28.70) >DroSec_CAF1 17676 114 + 1 ------AUGUGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUGCUGCUGCACUUCUGCCUGUUGGUCCU ------..((((.(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).))))).....(((........)))...))))....(((....)))... ( -29.60) >DroSim_CAF1 18449 114 + 1 ------AUGUGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUGCUGCUGCACUUCUGCCUGUUGGUCCU ------..((((.(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).))))).....(((........)))...))))....(((....)))... ( -29.60) >DroEre_CAF1 17900 115 + 1 ACUCCCAC-UGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUG---CUGCANNNNNNNN-NNNNNNNNN ......((-(...(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).))))).....))).........---.............-......... ( -25.90) >DroYak_CAF1 18370 116 + 1 ACUGGCAUGUGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUG---CUGCACUUCUGCC-GUUGGUCCU ...((((.((((.(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).))))).....(((........)---))))))...))))-......... ( -34.20) >consensus ______AUGUGUUUGCUGUCUGUGGCAUAAGCCGAGAGGUAAAUAAUUUCCCUCUUUUUAUUGCCCUGCAGUCAGCAUAAAAAGUCAAUAUCUG___CUGCACUUCUGCC_GUUGGUCCU ........((((.(((((.((((((((((((..((((((.((.....)).)))))))))).))))..)))).))))).....((.......))......))))................. (-25.47 = -25.52 + 0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:18 2006