Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,581,232 – 11,581,322 |
Length | 90 |
Max. P | 0.998779 |
Location | 11,581,232 – 11,581,322 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 98.67 |
Mean single sequence MFE | -22.38 |
Consensus MFE | -21.70 |
Energy contribution | -21.90 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.27 |
Structure conservation index | 0.97 |
SVM decision value | 3.22 |
SVM RNA-class probability | 0.998779 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11581232 90 - 20766785 AGCAACAUCUGAGAACAACAGUGCCCCGCAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG .((.......((((((....((((...(((....)))..)))).((((((((.....))))))))........))))))....))..... ( -22.80) >DroSec_CAF1 14977 90 - 1 UGCAACAUCUGAGAACAACAGUGCCGCGCAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG (((.......((((((....((((.(.(((....)))).)))).((((((((.....))))))))........))))))....))).... ( -24.50) >DroSim_CAF1 15775 90 - 1 AGCAACAUCUGAGAACAACAGUGCCCCACAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG .((.......((((((....((((....((....))...)))).((((((((.....))))))))........))))))....))..... ( -19.00) >DroEre_CAF1 15202 90 - 1 AGCAACAUCUGAGAACAACAGUGCCCCGCAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG .((.......((((((....((((...(((....)))..)))).((((((((.....))))))))........))))))....))..... ( -22.80) >DroYak_CAF1 15531 90 - 1 AGCAACAUCUGAGAACAACAGUGCCCCGCAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG .((.......((((((....((((...(((....)))..)))).((((((((.....))))))))........))))))....))..... ( -22.80) >consensus AGCAACAUCUGAGAACAACAGUGCCCCGCAGCAAUGCCAGCACACAGCAAAUUUGAUAUUUGUUGAUUUUUCCGUUUUCCUACGCAUUUG .((.......((((((....((((...(((....)))..)))).((((((((.....))))))))........))))))....))..... (-21.70 = -21.90 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:14 2006