Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,575,861 – 11,575,981 |
Length | 120 |
Max. P | 0.500000 |
Location | 11,575,861 – 11,575,981 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 85.41 |
Mean single sequence MFE | -31.94 |
Consensus MFE | -24.18 |
Energy contribution | -25.06 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.17 |
Mean z-score | -1.50 |
Structure conservation index | 0.76 |
SVM decision value | -0.06 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11575861 120 + 20766785 CGAAUGUUAAUCUGCGGAUGGAAAUCCUUGUCCAAAUUAACGUCAAAAUGUCCUGUGUCAUCAUCUCGCAAGGACAUGGCUAUGCUACUGUGAGUAGCGCCAAAAGUUUGAAGGUACAAU ....(((((((.((.((((....)))).....)).)))))))(((((((((((((((.........))).)))))))(((...(((((.....)))))))).....)))))......... ( -32.70) >DroSec_CAF1 12275 120 + 1 CGAAUGUUAAUCUGUGGAUGGUAAUCCUUGUCCAAAUUAACGUCAAAAUGUCCUGUGUCAUCAACUCGCAAGGACAUGGCUAUGCUACUGUGAGCAGUGCCAAAACUUUGAAGCUACAAU ....(((((((...((((..(......)..)))).)))))))(((((((((((((((.........))).)))))))(((..((((......))))..))).....)))))......... ( -33.40) >DroSim_CAF1 13037 120 + 1 CGAAUGUUAAUCUGCGGAUGGAAAUCCUUGUCCAAAUUAACGUCAAAAUGUCCUGUGUCAUCAUCUCGCAAGGACAUGGCUAUGCUACUGUGAGCAGUGCCAAAACUUUGAAGCUACAAU ....(((((((.((.((((....)))).....)).)))))))(((((((((((((((.........))).)))))))(((..((((......))))..))).....)))))......... ( -31.70) >DroEre_CAF1 12468 113 + 1 UGAAGGUUAAUCUGUGGAUGGAAAUCCUUGUCCAAAUUAGCGUCAAAAUGUCCUGUGUCAUCAUCUCCGGAGGACAUGGCUGUGUUACUGUGAGCACCGCCAAAAGUUUGUAG------- (((..((((((...(((((((....))..))))).)))))).)))..(((((((.((..........)).)))))))(((.(((((......))))).)))............------- ( -32.90) >DroYak_CAF1 12640 110 + 1 UGACGGUUGAUCUGUGGAUGCAAAUCCUUGUCCAAAUUAGCGUCAAAAUGUCCUGUGUGAUCGUUUUCGAAGGACAUGGCUAUGUUACUUUGAGCAC---CAAAAGUUUGAUG------- .(((..(((......((((....)))).((..((((.((((((....(((((((...(((......))).)))))))....)))))).))))..)).---)))..))).....------- ( -29.00) >consensus CGAAUGUUAAUCUGUGGAUGGAAAUCCUUGUCCAAAUUAACGUCAAAAUGUCCUGUGUCAUCAUCUCGCAAGGACAUGGCUAUGCUACUGUGAGCAGCGCCAAAAGUUUGAAG_UACAAU .....((((((...(((((((....))..))))).)))))).(((((((((((((((.........)))).))))))(((..((((......))))..))).....)))))......... (-24.18 = -25.06 + 0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:07 2006