Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,575,080 – 11,575,179 |
Length | 99 |
Max. P | 0.546180 |
Location | 11,575,080 – 11,575,179 |
---|---|
Length | 99 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.08 |
Mean single sequence MFE | -20.07 |
Consensus MFE | -15.70 |
Energy contribution | -15.33 |
Covariance contribution | -0.37 |
Combinations/Pair | 1.06 |
Mean z-score | -1.48 |
Structure conservation index | 0.78 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.546180 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11575080 99 + 20766785 AAAAACGGGCCGAAA---AAAGCCAUCACAAAGGAAACACACUGUGAAUAUUCAUGAGAAAUUGCCGUUGAACGUUUGCCUG------------------UUGUUGGCCAAAAAAAAAAA .......((((((..---..(((.........(....).....(..((..((((((.(......))).))))..))..)..)------------------)).))))))........... ( -18.20) >DroSec_CAF1 11511 98 + 1 AAAAACGGGCCGAAA---AAAGCCAUCACAAAGGAAACACACUGUGAAUAUUCAUAAGAAAUUGUCGUUGAACGUUUGCCUG------------------UUGUUGGCCAAAAAAAAAA- .......((((((..---..(((.........(....).....(..((..((((...((.....))..))))..))..)..)------------------)).))))))..........- ( -19.70) >DroSim_CAF1 11824 97 + 1 AAAAACGGGCCGAAA---AAAGCCAUCACAAAGGAAACACACUGUGAAUAUUCAUGAGAAAUUGUCGUUGAACGUUUGCCAG------------------UUGUUGGCCAAAAAAA-AA- .......((((....---....((........)).((((.((((..((..((((...((.....))..))))..))..).))------------------))))))))).......-..- ( -20.70) >DroYak_CAF1 11870 111 + 1 AAAAACGUGCCGAAAAAAAGAGCCAUCACAAAGGA--CACACUGUGAAUAUUCAUGAGUAAUUGCCGUUGAAUGUUUGCCAGCAUAGUUCGCAAUCACAAUUGUUGGCGAAAA------- .....................((((.......(((--(...(((..((((((((((.((....)))).))))))))..).))....))))(((((....))))))))).....------- ( -21.70) >consensus AAAAACGGGCCGAAA___AAAGCCAUCACAAAGGAAACACACUGUGAAUAUUCAUGAGAAAUUGCCGUUGAACGUUUGCCAG__________________UUGUUGGCCAAAAAAA_AA_ .......((((((...................(....).....(..(((.((((...(.......)..)))).)))..)........................))))))........... (-15.70 = -15.33 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:06 2006