Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,574,856 – 11,575,003 |
Length | 147 |
Max. P | 0.902559 |
Location | 11,574,856 – 11,574,963 |
---|---|
Length | 107 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.48 |
Mean single sequence MFE | -48.90 |
Consensus MFE | -33.66 |
Energy contribution | -35.35 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.09 |
Mean z-score | -2.03 |
Structure conservation index | 0.69 |
SVM decision value | 0.99 |
SVM RNA-class probability | 0.895725 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11574856 107 - 20766785 CAGUGGAGGCAUCGGCUUGGGCUUC------GGAUCGGGUUUGGUUAUCGGCCGGAAGGG-------CUGUUUGUCCGUCCGGUUUCGGAGGCGGAGUCCUAAACGAUGAGGCGGCUGGG ((((.(...(((((....(((((((------(..((.((..........(((((((.(((-------(.....)))).))))))))).))..))))))))....)))))...).)))).. ( -47.20) >DroSec_CAF1 11298 102 - 1 CAGCGCAGGCAUC------------------GGAUCGGGCUUGGUUAUCGGCCGGAAGGGCUUACGGCUGUUUGUCCGUCCGUUUUCGGAGGCGGAGUCCAAAACGAUGAGGCGGCUGGC ((((((...((((------------------(..(.((((((.((..((((.((((.((((..((....))..)))).))))...))))..)).)))))).)..)))))..)).)))).. ( -44.50) >DroSim_CAF1 11599 114 - 1 CAGCGGAGGCAUCGGCUUGGGCUUC------GGAUCGGGCUUGGUUAUCGGCCGGAAGGGCUUACGGCUGUUUGUCCGUCCGGUUUCGGAGGCGGAGUCCUAAACGAUGUGGCGGCUGGC ((((.(..((((((....(..(...------.)..)((((((.((..(((((((((.((((..((....))..)))).))))))..)))..)).))))))....))))))..).)))).. ( -52.50) >DroEre_CAF1 11528 117 - 1 CAGUGGAGGCAUCGGCUUGGGCUUGGGCUUGGGCUUGGGUUUGGUUAUCGGCCGGAAGGGCUUACGGCUGUUUGUCCGUCCGGUUGGGAAGGCGGAGUCCUAGGCGAUGAU---GCUUGG ......((((((((..(..(((....)))..)((((((((((.(((.(((((((((.((((..((....))..)))).)))))))))...))).))).)))))))..))))---)))).. ( -51.40) >consensus CAGCGGAGGCAUCGGCUUGGGCUUC______GGAUCGGGCUUGGUUAUCGGCCGGAAGGGCUUACGGCUGUUUGUCCGUCCGGUUUCGGAGGCGGAGUCCUAAACGAUGAGGCGGCUGGC ((((.(...(((((((....))..............((((((.((..(((((((((.((((..((....))..)))).))))))..)))..)).))))))....)))))...).)))).. (-33.66 = -35.35 + 1.69)
Location | 11,574,896 – 11,575,003 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.18 |
Mean single sequence MFE | -41.18 |
Consensus MFE | -28.58 |
Energy contribution | -28.94 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.13 |
Mean z-score | -2.25 |
Structure conservation index | 0.69 |
SVM decision value | 1.03 |
SVM RNA-class probability | 0.902559 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11574896 107 - 20766785 UAAAGCUAAAGCAAAGAGCUUGGGCAAACAGUAGAAGCAUCAGUGGAGGCAUCGGCUUGGGCUUC------GGAUCGGGUUUGGUUAUCGGCCGGAAGGG-------CUGUUUGUCCGUC ..(((((.........)))))(((((((((((.(((((...(((.((....)).)))...)))))------...((.((((........)))).))...)-------))))))))))... ( -38.80) >DroSec_CAF1 11338 102 - 1 UAAAGCUAAAGCAAAGAGCUUGGGCAAACAGUAGAAGCAUCAGCGCAGGCAUC------------------GGAUCGGGCUUGGUUAUCGGCCGGAAGGGCUUACGGCUGUUUGUCCGUC ..(((((.........)))))(((((((((((..((((...(((.(((((.((------------------(...))))))))))).....((....))))))...)))))))))))... ( -39.20) >DroSim_CAF1 11639 114 - 1 UAAAGCUAAAGCAAAGAGCUUGGGCAAACAGUAGAAGCAUCAGCGGAGGCAUCGGCUUGGGCUUC------GGAUCGGGCUUGGUUAUCGGCCGGAAGGGCUUACGGCUGUUUGUCCGUC ..(((((.........)))))(((((((((((..((((.....(((..((...((((((..(...------.)..))))))..))..))).((....))))))...)))))))))))... ( -46.00) >DroEre_CAF1 11565 120 - 1 UAAAGCUAAAGCAAAGAGCUUGGGCAAACAGCAGACGCAUCAGUGGAGGCAUCGGCUUGGGCUUGGGCUUGGGCUUGGGUUUGGUUAUCGGCCGGAAGGGCUUACGGCUGUUUGUCCGUC ..(((((.........)))))(((((((((((...(((....))).((((.((((.(..((((..(((....)))..))))..)...))))((....))))))...)))))))))))... ( -47.00) >DroYak_CAF1 11706 105 - 1 UAAAGCUAAAGCAAAGAGCUUGGGCAAACAGUAGAAGCAUCAAUGGAGG---------------AGGCAUCGGCUUGGGUUUGGUUAUCGGCCGGAAGGGCUUACGGCUGUUUGUCCGUC ..(((((.........)))))(((((((((((..(((((((((......---------------((((....))))....)))))......((....))))))...)))))))))))... ( -34.90) >consensus UAAAGCUAAAGCAAAGAGCUUGGGCAAACAGUAGAAGCAUCAGUGGAGGCAUCGGCUUGGGCUUC______GGAUCGGGUUUGGUUAUCGGCCGGAAGGGCUUACGGCUGUUUGUCCGUC ..(((((.........)))))(((((((((((..((((.((.((....))........................((.((((........)))).)).))))))...)))))))))))... (-28.58 = -28.94 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:05 2006