Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 11,573,584 – 11,573,683 |
Length | 99 |
Max. P | 0.886096 |
Location | 11,573,584 – 11,573,683 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 95.76 |
Mean single sequence MFE | -23.60 |
Consensus MFE | -20.84 |
Energy contribution | -20.68 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.04 |
Mean z-score | -1.50 |
Structure conservation index | 0.88 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.886096 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 11573584 99 + 20766785 GCACUCAACAACCAGAUCAGACCCUGAUCCACACCCACGUCCAUGUCCAUCAGACUCAGCCAAAGGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC ((((((..........((.((..(((((..(((..........)))..)))))..)).(((...)))))((((((((.....))).))))).))).))) ( -21.20) >DroSec_CAF1 10068 99 + 1 GCACUCAACAACCAGAUCAGACCCUGAUCCACACCCACGUCCAUGUCCAUCAGACUCAGCCGAAGGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC ((((((........((((((...))))))..(.((..((.(...(((.....)))...).))..)).).((((((((.....))).))))).))).))) ( -22.00) >DroSim_CAF1 10349 99 + 1 GCACUCAACAACCAGAUCAGACCCUGAUCCACACCCACGUCCAUGUCCAUCAGACUCAGCCAAAGGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC ((((((..........((.((..(((((..(((..........)))..)))))..)).(((...)))))((((((((.....))).))))).))).))) ( -21.20) >DroEre_CAF1 10326 99 + 1 GCACUCAGCAGCCAGAUCAGACCCUGAUCCACACCCACGUCGGUGUCCAUCAGACUCAGCCAAAGGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC ((((((.((((((......((..(((((..(((((......)))))..)))))..)).(((...)))..)))(((((.....))))))))..))).))) ( -29.10) >DroYak_CAF1 10460 99 + 1 GUACUCAACAGCCAGAUCAGACCCUGAUCCACACCCACGACGGUGUCCAUCAGACUCAGCCAAGAGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC ..((((..........((.((..(((((..(((((......)))))..)))))..)).((.....))))((((((((.....))).))))).))))... ( -24.50) >consensus GCACUCAACAACCAGAUCAGACCCUGAUCCACACCCACGUCCAUGUCCAUCAGACUCAGCCAAAGGCGAGGCAAUUAGAAAAUAAUUUGCCAGAGUUGC ((((((..........((.((..(((((..(((..........)))..)))))..)).((.....))))((((((((.....))).))))).))).))) (-20.84 = -20.68 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:03 2006